Pre_GI: BLASTP Hits

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Query: NC_003366:1122654:1133234 Clostridium perfringens str. 13, complete genome

Start: 1133234, End: 1133662, Length: 429

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:1332864:134409813440981344526429Clostridium perfringens ATCC 13124, complete genomeDhaG protein3e-57219
NC_008262:1139500:115071011507101151138429Clostridium perfringens SM101, complete genomehypothetical protein3e-57219
NC_010723:2082750:209038320903832090808426Clostridium botulinum E3 str. Alaska E43, complete genomeDhaG protein3e-53206
NC_010674:2185704:219551621955162195941426Clostridium botulinum B str. Eklund 17B, complete genomeDhaG protein1e-51201
NC_014632:1404000:141623914162391416658420Ilyobacter polytropus DSM 2926 chromosome, complete genomeATP:cob(I)alamin adenosyltransferase3e-31133
NC_009648:3803622:384911138491113849542432Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-30130
NC_014633:442755:4598114598114608661056Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceATP/cobalamin adenosyltransferase1e-1788.2
NC_010125:2884762:293636829363682936778411Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein3e-1580.5
NC_012488:1159463:117288711728871173882996Listeria monocytogenes Clip81459, complete genomePduO protein3e-1580.5
NC_013766:1202713:121483912148391215834996Listeria monocytogenes 08-5578 chromosome, complete genomeATP:cob(I)alamin adenosyltransferase protein PduO8e-1579
NC_004431:4270305:430980443098044310301498Escherichia coli CFT073, complete genomehypothetical protein1e-1478.2
NC_019970:2080419:208445520844552085420966Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeATP:cob(I)alamin adenosyltransferase2e-1477.8
NC_014654:1113116:112749411274941127910417Halanaerobium sp. 'sapolanicus' chromosome, complete genomeprotein of unknown function DUF3361e-1375.1
NC_018000:1877183:189300618930061893422417Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein2e-1374.7
NC_014538:985339:99937199937110003721002Thermoanaerobacter sp. X513 chromosome, complete genomeATP/cobalamin adenosyltransferase8e-1372.4
NC_010320:1949852:1953972195397219549731002Thermoanaerobacter sp. X514 chromosome, complete genomeATP--cobalamin adenosyltransferase8e-1372.4
NC_016613:1877688:188092018809201881384465Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein1e-1272
NC_011666:1923776:193884419388441939278435Methylocella silvestris BL2, complete genomeprotein of unknown function DUF3362e-1167.8
NC_002754:1061851:106391710639171064336420Sulfolobus solfataricus P2, complete genomehypothetical protein8e-0958.9
NC_021171:2019755:203972920397292040163435Bacillus sp. 1NLA3E, complete genomehypothetical protein2e-0857.4
NC_013769:316789:341878341878342297420Sulfolobus islandicus L.D.8.5 chromosome, complete genomehypothetical protein3e-0857
NC_017275:377800:383651383651384070420Sulfolobus islandicus HVE10/4 chromosome, complete genomehypothetical protein3e-0857
NC_017276:337286:343962343962344381420Sulfolobus islandicus REY15A chromosome, complete genomehypothetical protein3e-0857
NC_018697:505915:517403517403517834432Cycloclasticus sp. P1 chromosome, complete genomeputative CmpX-like protein4e-0856.6
NC_012726:346539:353062353062353481420Sulfolobus islandicus M.16.4 chromosome, complete genomehypothetical protein6e-0856.2
NC_017243:1813158:182684918268491827247399Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein1e-0755.5
NC_012589:347020:353534353534353953420Sulfolobus islandicus L.S.2.15, complete genomeprotein of unknown function DUF3362e-0754.3
NC_013517:1055854:112091811209181121397480Sebaldella termitidis ATCC 33386, complete genomeprotein of unknown function DUF3362e-0754.3
NC_007298:1418500:145800214580021458445444Dechloromonas aromatica RCB, complete genomeProtein of unknown function DUF3362e-0651.2
NC_007973:1411714:143719814371981437647450Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3364e-0650.1