Pre_GI: BLASTP Hits

Some Help

Query: NC_003366:1122654:1130486 Clostridium perfringens str. 13, complete genome

Start: 1130486, End: 1132336, Length: 1851

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:1332864:1341350134135013432001851Clostridium perfringens ATCC 13124, complete genomeglycerol dehydratase reactivation factor, large subunit01194
NC_008262:1139500:1147962114796211498121851Clostridium perfringens SM101, complete genomeglycerol dehydratase reactivation factor, large subunit01186
NC_010723:2082750:2091719209171920935571839Clostridium botulinum E3 str. Alaska E43, complete genomeglycerol dehydratase reactivation factor large subunit0970
NC_010674:2185704:2196854219685421986921839Clostridium botulinum B str. Eklund 17B, complete genomeglycerol dehydratase reactivation factor large subunit0968
NC_014633:442755:4550624550624568761815Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceglycerol dehydratase reactivation factor, large subunit0772
NC_013517:1055854:1118724111872411205531830Sebaldella termitidis ATCC 33386, complete genomeDiol/glycerol dehydratase reactivating factor large subunit0770
NC_009648:3803622:3844172384417238459951824Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeglycerol dehyrdratase activator0765
NC_017243:1813158:1827615182761518294861872Brachyspira intermedia PWS/A chromosome, complete genomediol/glycerol dehydratase reactivating factor large subunit0748
NC_012488:1159463:1167715116771511695351821Listeria monocytogenes Clip81459, complete genomediol dehydratase-reactivating factor large subunit0742
NC_014632:1404000:1411693141169314135161824Ilyobacter polytropus DSM 2926 chromosome, complete genomeglycerol dehydratase reactivation factor, large subunit0741
NC_013766:1202713:1209667120966712114871821Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein0739
NC_019970:2080419:2088596208859620904191824Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeexopolyphosphatase0728
NC_010320:1949852:1958620195862019604341815Thermoanaerobacter sp. X514 chromosome, complete genomehypothetical protein0703
NC_014538:985339:9939109939109957241815Thermoanaerobacter sp. X513 chromosome, complete genomeDiol/glycerol dehydratase reactivating factor large subunit0703
NC_014654:1113116:1121549112154911233901842Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDiol/glycerol dehydratase reactivating factor large subunit0692
NC_016860:397138:411643411643412020378Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-46188
NC_011205:371001:373577373577373945369Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-37158
NC_011083:403022:417314417314417682369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-37158
NC_011294:346915:349491349491349856366Salmonella enterica subsp. enterica serovar Enteritidis str5e-37156
NC_016860:397138:411387411387411659273Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-1996.3