Pre_GI: BLASTP Hits

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Query: NC_003366:1122654:1129452 Clostridium perfringens str. 13, complete genome

Start: 1129452, End: 1130024, Length: 573

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:1332864:134032213403221340888567Clostridium perfringens ATCC 13124, complete genomecoenzyme B12-dependent glycerol dehydratase, medium subunit1e-84312
NC_008262:1139500:114693411469341147500567Clostridium perfringens SM101, complete genomeglycerol dehydratase, beta subunit1e-84311
NC_010723:2082750:209402920940292094604576Clostridium botulinum E3 str. Alaska E43, complete genomepropanediol utilization: dehydratase, medium subunit6e-65246
NC_010674:2185704:219916421991642199739576Clostridium botulinum B str. Eklund 17B, complete genomepropanediol utilization: dehydratase, medium subunit3e-64244
NC_014632:1404000:141397914139791414542564Ilyobacter polytropus DSM 2926 chromosome, complete genomeglycerol dehydratase, cobalamin-dependent subunit beta5e-60230
NC_019970:2080419:209095120909512091607657Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDehydratase medium subunit2e-54211
NC_009648:3803622:384643638464363847020585Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeglycerol dehydratase1e-53209
NC_014633:442755:453864453864454517654Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencedehydratase medium subunit5e-51200
NC_013517:1055854:111742611174261118100675Sebaldella termitidis ATCC 33386, complete genomedehydratase medium subunit2e-50198
NC_012488:1159463:116648111664811167140660Listeria monocytogenes Clip81459, complete genomediol dehydrase (diol dehydratase) gamma subunit3e-50197
NC_013766:1202713:120843412084341209093660Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein3e-50197
NC_010320:1949852:196096919609691961658690Thermoanaerobacter sp. X514 chromosome, complete genomedehydratase, medium subunit2e-47188
NC_014538:985339:992686992686993375690Thermoanaerobacter sp. X513 chromosome, complete genomedehydratase medium subunit2e-47188
NC_017243:1813158:183021718302171830903687Brachyspira intermedia PWS/A chromosome, complete genomedehydratase medium subunit2e-47187
NC_014654:1113116:112032411203241120980657Halanaerobium sp. 'sapolanicus' chromosome, complete genomedehydratase medium subunit5e-39160
NC_008497:1575884:157642415764241577143720Lactobacillus brevis ATCC 367, complete genomeDiol Dehydratase medium subunit4e-38157