Pre_GI: BLASTP Hits

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Query: NC_003306:22228:26191 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 26191, End: 27891, Length: 1701

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:2645626456281981743Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein01127
NC_009659:1129066:1159865115986511615861722Janthinobacterium sp. Marseille chromosome, complete genomeATP-dependent DNA helicase2e-123443
NC_020260:603796:6255796255796273061728Cronobacter sakazakii Sp291, complete genomeATP-dependent DNA helicase5e-122438
NC_003919:4618988:4634759463475946365881830Xanthomonas axonopodis pv. citri str. 306, complete genomeDNA helicase4e-114412
NC_007760:3735749:3743073374307337448961824Anaeromyxobacter dehalogenans 2CP-C, complete genomeUvrD/REP helicase5e-1996.3
NC_008435:4530797:4544630454463045464141785Rhodopseudomonas palustris BisA53, complete genomesuperfamily I DNA and RNA helicases-like protein1e-1688.6
NC_015660:3328595:3343779334377933455871809Geobacillus thermoglucosidasius C56-YS93 chromosome, completeUvrD/REP helicase8e-1685.9
NC_003552:2634828:2646157264615726479951839Methanosarcina acetivorans C2A, complete genomeDNA helicase9e-1685.5
NC_015416:621513:6303006303006320961797Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein2e-1584.3
NC_007907:5185510:5268982526898252707661785Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1583.2
NC_008752:725189:7342797342797360781800Acidovorax avenae subsp. citrulli AAC00-1, complete genomeUvrD/REP helicase1e-1378.6
NC_016902:44744:6009460094617191626Escherichia coli KO11FL chromosome, complete genomeUvrD/REP helicase3e-1377
CP002516:44744:6009460094617191626Escherichia coli KO11, complete genomeUvrD/REP helicase3e-1377
CP002185:4035502:4044354404435440459791626Escherichia coli W, complete genomehypothetical protein3e-1377
NC_018645:3029785:3040255304025530419821728Desulfobacula toluolica Tol2, complete genomeATP-dependent DNA helicase, UvrD family2e-1274.3
NC_011206:2685499:2685499268549926876282130Acidithiobacillus ferrooxidans ATCC 53993, complete genomeUvrD/REP helicase6e-1273.2
NC_011761:2785660:2785660278566027877892130Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA helicase II6e-1273.2
NC_018867:10238:5577655776576231848Dehalobacter sp. CF chromosome, complete genomeATP-dependent DNA helicase UvrD/PcrA1e-1171.6
NC_014218:1437931:1439939143993914424492511Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeUvrD/REP helicase3e-1170.5
NC_014408:806720:8331098331098358652757Methanothermobacter marburgensis str. Marburg chromosome, completeATP-dependent DNA helicase8e-1169.3
NC_007644:2099878:2099878209987821020672190Moorella thermoacetica ATCC 39073, complete genomeATP-dependent DNA helicase PcrA1e-1068.6
NC_009441:4449500:4470831447083144731942364Flavobacterium johnsoniae UW101 chromosome, complete genomeUvrD/REP helicase1e-1068.6
NC_012691:2614603:2651101265110126529151815Tolumonas auensis DSM 9187, complete genomeUvrD/REP helicase2e-1067.8
NC_013421:1780722:1782499178249917843191821Pectobacterium wasabiae WPP163, complete genomeUvrD/REP helicase2e-1067.8
NC_014829:443500:4665374665374688192283Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeATP-dependent DNA helicase PcrA3e-1067.4
NC_009138:1974935:2006405200640520081711767Herminiimonas arsenicoxydans, complete genomeputative DNA helicase II4e-1067
NC_014376:1842290:1845537184553718478252289Clostridium saccharolyticum WM1 chromosome, complete genomeUvrD/REP helicase3e-1067
NC_016599:3434996:3434996343499634373742379Owenweeksia hongkongensis DSM 17368 chromosome, complete genomeDNA/RNA helicase5e-1066.6
NC_014831:329983:3299833299833323582376Thermaerobacter marianensis DSM 12885 chromosome, complete genomeATP-dependent DNA helicase PcrA5e-1066.6
NC_012982:711122:7184207184207218243405Hirschia baltica ATCC 49814, complete genomeUvrD/REP helicase7e-1066.2
NC_007519:3527207:3527207352720735293662160Desulfovibrio alaskensis G20 chromosome, complete genomeATP-dependent DNA helicase UvrD1e-0965.5
NC_014541:4167916:4183237418323741854022166Ferrimonas balearica DSM 9799 chromosome, complete genomeATP-dependent DNA helicase UvrD1e-0965.1
NC_021184:1484352:1504552150455215064291878Desulfotomaculum gibsoniae DSM 7213, complete genomeDNA/RNA helicase, superfamily I1e-0965.1
NC_010688:2781624:2830414283041428322281815Xanthomonas campestris pv. campestris, complete genomeATP-dependent DNA helicase2e-0964.7
NC_019673:2051363:2075979207597920772981320Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0964.7
NC_015067:1528984:1554473155447315585884116Bifidobacterium longum subsp. longum JCM 1217, complete genomeATP-dependent nuclease subunit A3e-0963.9
NC_012691:1743038:1776646177664617784031758Tolumonas auensis DSM 9187, complete genomeUvrD/REP helicase3e-0963.9
NC_016776:2956444:2997159299715929995192361Bacteroides fragilis 638R, complete genomeputative helicase4e-0963.5
NC_003228:2973266:2979834297983429821942361Bacteroides fragilis NCTC 9343, complete genomeputative helicase4e-0963.5
NC_007951:2087385:2104394210439421059561563Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative ATP-dependent DNA helicase, Rep5e-0963.2
NC_007645:713930:7350657350657372302166Hahella chejuensis KCTC 2396, complete genomeSuperfamily I DNA and RNA helicase5e-0963.2
NC_009801:3374501:3383223338322333851151893Escherichia coli E24377A, complete genomehelicase, UvrD family6e-0962.8
NC_014752:197000:2004822004822026892208Neisseria lactamica ST-640, complete genomeDNA helicase II6e-0962.8
NC_010545:619346:6399726399726430403069Corynebacterium urealyticum DSM 7109, complete genomeputative ATP-dependent DNA helicase II8e-0962.4
NC_013850:1753716:1762794176279417646111818Klebsiella variicola At-22 chromosome, complete genomeUvrD/REP helicase1e-0861.6
NC_011830:720756:7207567207567225641809Desulfitobacterium hafniense DCB-2, complete genomeUvrD/REP helicase1e-0861.6
NC_006347:2899653:2906221290622129085812361Bacteroides fragilis YCH46, complete genomeATP-dependent DNA helicase2e-0861.6
NC_012704:1747539:1749208174920817513252118Corynebacterium kroppenstedtii DSM 44385, complete genomeputative ATP-dependent DNA helicase II2e-0861.2
NC_015573:1671000:1688552168855216907562205Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeATP-dependent DNA helicase PcrA2e-0860.8
NC_009075:15017:3059630596323951800Burkholderia pseudomallei 668 chromosome II, complete sequenceUvrD/REP helicase3e-0860.8
NC_013223:2279869:2304961230496123071052145Desulfohalobium retbaense DSM 5692, complete genomeUvrD/REP helicase3e-0860.8
NC_015578:3561838:3561838356183835651973360Treponema primitia ZAS-2 chromosome, complete genomeDNA and RNA helicase3e-0860.5
NC_014803:709000:7160817160817179971917Pseudoalteromonas sp. SM9913 chromosome chromosome I, completeUvrD family helicase5e-0859.7
NC_018868:2867500:2882650288265028846712022Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeATP-dependent DNA helicase Rep7e-0859.3
NC_004557:691944:7134697134697156312163Clostridium tetani E88, complete genomeDNA helicase II7e-0859.3
NC_015676:109743:1250711250711278602790Methanosalsum zhilinae DSM 4017 chromosome, complete genomeUvrD/REP helicase9e-0858.9
NC_018080:6048516:6099658609965861016672010Pseudomonas aeruginosa DK2 chromosome, complete genomeATP-dependent DNA helicase Rep1e-0758.9
NC_014210:3248526:3270944327094432730612118Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,UvrD/REP helicase2e-0758.2
NC_020210:2133996:2174276217427621763362061Geobacillus sp. GHH01, complete genomeDNA/RNA helicase2e-0758.2
NC_014311:3076519:3093373309337330950101638Ralstonia solanacearum PSI07 chromosome, complete genomeATP-dependent DNA helicase Rep2e-0758.2
NC_007760:3655433:3675980367598036777551776Anaeromyxobacter dehalogenans 2CP-C, complete genomeUvrD/REP helicase3e-0757.4
NC_010655:1160384:1160384116038411623902007Akkermansia muciniphila ATCC BAA-835, complete genomeUvrD/REP helicase3e-0757.4
NC_014098:2225174:2258626225862622608482223Bacillus tusciae DSM 2912 chromosome, complete genomeUvrD/REP helicase4e-0757
NC_020829:5382500:5399636539963654016452010Pseudomonas denitrificans ATCC 13867, complete genomeATP-dependent DNA helicase Rep4e-0756.6
NC_018868:619113:6620786620786639581881Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein5e-0756.6
NC_015977:2807782:2831058283105828339462889Roseburia hominis A2-183 chromosome, complete genomeSuperfamily I helicase domain and RecB family exonuclease domain containing protein6e-0756.2
NC_009483:2136424:2144486214448621463481863Geobacter uraniireducens Rf4 chromosome, complete genomeUvrD/REP helicase6e-0756.2
NC_020453:7826358:7826358782635878296753318Agromonas oligotrophica S58 DNA, complete genomeUvrD/REP helicase7e-0756.2
NC_007974:2048000:2081873208187320836481776Ralstonia metallidurans CH34 chromosome 2, complete sequenceSuperfamily I DNA and RNA helicases-like protein7e-0756.2
NC_009092:1441813:1461981146198114640172037Shewanella loihica PV-4, complete genomeUvrD/REP helicase8e-0755.8
NC_018515:3169973:3177608317760831798482241Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent DNA helicase PcrA9e-0755.8
NC_003063:304962:3068053068053089252121Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-0655.5
NC_003305:1743939:1765832176583217678982067Agrobacterium tumefaciens str. C58 chromosome linear, completeATP-dependent DNA helicase1e-0655.5
NC_021184:3793285:3798282379828238022203939Desulfotomaculum gibsoniae DSM 7213, complete genomeATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing1e-0655.5
NC_013665:918313:9634339634339666963264Methanocella paludicola SANAE, complete genomeputative ATP-dependent DNA helicase1e-0655.1
NC_014837:1144500:1151150115115011545423393Pantoea sp. At-9b chromosome, complete genomeUvrD/REP helicase2e-0655.1
NC_008781:2575213:2586714258671425901393426Polaromonas naphthalenivorans CJ2, complete genomeUvrD/REP helicase2e-0654.7
NC_007651:1620000:1633823163382316365852763Burkholderia thailandensis E264 chromosome I, complete sequenceSuperfamily I DNA and RNA helicases2e-0654.7
NC_017047:2042346:2042926204292620463183393Rahnella aquatilis HX2 chromosome, complete genomeUvrD/REP helicase3e-0654.3
NC_008228:816000:8307258307258335142790Pseudoalteromonas atlantica T6c, complete genomeUvrD/REP helicase2e-0654.3
NC_010278:1467146:1468739146873914709372199Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA-dependent helicase II2e-0654.3
NC_008757:151862:1666791666791683431665Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeUvrD/REP helicase6e-0652.8
NC_012811:317308:3394763394763414762001Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative ATP-dependent DNA helicase9e-0652.4