Pre_GI: BLASTP Hits

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Query: NC_003305:693810:697327 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 697327, End: 698262, Length: 936

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1358738:137649413764941377429936Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein9e-176615
NC_008752:3007073:301611630161163016958843Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein5e-1375.5
NC_008752:2334511:234730923473092347773465Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-1272