Pre_GI: BLASTP Hits

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Query: NC_003305:1743939:1771862 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1771862, End: 1772575, Length: 714

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015856:268034:293167293167293937771Collimonas fungivorans Ter331 chromosome, complete genomeputative D-glucarate or D-galactorate regulator, GntR family2e-33142
NC_007963:2777066:277978327797832780505723Chromohalobacter salexigens DSM 3043, complete genomeGntR-like protein9e-21100
NC_004129:4093610:4101896410189641035061611Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, GntR family/amidohydrolase family protein1e-1997.1
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein1e-1893.2
NC_017033:1089579:110918911091891109923735Frateuria aurantia DSM 6220 chromosome, complete genometranscriptional regulator4e-1788.2
NC_015177:915366:934323934323934973651Pedobacter saltans DSM 12145 chromosome, complete genometranscriptional regulator, GntR family2e-1685.9
NC_003305:1297785:131267613126761313407732Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family6e-1684.3
NC_003063:757999:761406761406762080675Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein9e-1684
NC_014364:815346:820369820369821073705Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein1e-1583.2
NC_002678:7004370:703210170321017032844744Mesorhizobium loti MAFF303099, complete genometranscriptional regulator1e-1480.1
NC_013740:1218429:123236812323681233063696Acidaminococcus fermentans DSM 20731, complete genomeGntR domain protein4e-1478.6
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator4e-1478.2
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family2e-1376.3
NC_014118:1528851:152885115288511529540690Burkholderia sp. CCGE1002 chromosome chromosome 2, completeregulatory protein GntR HTH5e-1374.7
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein1e-1273.6
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator2e-1272.8
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator2e-1272.8
NC_008314:2744553:277746027774602778158699Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, GntR-family2e-1272.8
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein3e-1272.4
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein3e-1272
NC_008596:4196194:420135942013594202099741Mycobacterium smegmatis str. MC2 155, complete genomeGntR-family protein transcriptional regulator5e-1271.6
NC_014966:1668822:169026116902611691052792Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator1e-1170.5
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator5e-1168.2
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme5e-1168.2
NC_008593:640000:651050651050651724675Clostridium novyi NT, complete genometranscriptional regulator, GntR family, putative7e-1167.8
NC_008544:818730:826049826049826807759Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceGntR domain protein9e-1167.4
NC_008060:1346581:135718313571831357941759Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceGntR-like9e-1167.4
NC_012912:844339:850632850632851399768Dickeya zeae Ech1591, complete genomeGntR domain protein8e-1167.4
NC_010995:948041:986825986825987535711Cellvibrio japonicus Ueda107, complete genometranscriptional regulator, GntR family7e-1167.4
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family9e-1167
NC_015733:3595882:361682836168283617592765Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC9e-1167
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein3e-1065.9
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator3e-1065.5
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator7e-1064.3
NC_016582:11820671:118416551184165511842452798Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator7e-1064.3
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein1e-0963.9
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH1e-0963.2
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein2e-0962.8
NC_016782:2088858:208885820888582089556699Corynebacterium diphtheriae 241 chromosome, complete genomeputative transcriptional regulator2e-0962.8
NC_016800:2127200:212885421288542129552699Corynebacterium diphtheriae BH8 chromosome, complete genomeputative transcriptional regulator2e-0962.8
NC_021171:4549673:455230045523004552956657Bacillus sp. 1NLA3E, complete genomeGntR family transcriptional regulator2e-0962.8
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator2e-0962.8
NC_016612:361417:361417361417362190774Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator protein2e-0962.4
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator3e-0962.4
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon3e-0962.4
NC_014165:92500:101315101315101695381Thermobispora bispora DSM 43833 chromosome, complete genomeGntR family transcriptional regulator3e-0962
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein3e-0962
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein3e-0962
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein3e-0962
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0962
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein3e-0962
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein3e-0962
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator3e-0962
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR3e-0962
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein5e-0961.6
NC_014306:2518996:252033425203342521041708Erwinia billingiae Eb661, complete genomeTranscriptional regulator, GntR family5e-0961.6
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein6e-0961.2
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family8e-0960.8
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator7e-0960.8
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR7e-0960.8
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-0960.8
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR7e-0960.8
NC_015761:4355335:437435443743544375127774Salmonella bongori NCTC 12419, complete genomeuxu operon transcriptional regulator1e-0860.5
NC_014364:2751662:275653427565342757214681Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein2e-0859.3
NC_010465:3046904:306868030686803069423744Yersinia pseudotuberculosis YPIII, complete genomeGntR domain protein2e-0859.3
NC_008149:3022970:304472130447213045464744Yersinia pestis Nepal516, complete genometranscriptional regulatory protein2e-0859.3
NC_009708:3035798:305763230576323058375744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeuxu operon transcriptional regulator2e-0859.3
NC_017160:1299733:132130713213071322050744Yersinia pestis D182038 chromosome, complete genometranscriptional regulator2e-0859.3
NC_005810:1413305:143504514350451435806762Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein2e-0859.3
NC_014831:2082304:210025021002502100963714Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, GntR family2e-0859.3
NC_004088:3186954:320871332087133209513801Yersinia pestis KIM, complete genomeregulator for uxu operon2e-0859.3
NC_017265:2807302:282906228290622829862801Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional repressor2e-0859.3
NC_007777:5087405:509495850949585095722765Frankia sp. CcI3, complete genometranscriptional regulator, GntR family2e-0859.3
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR3e-0858.9
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR3e-0858.9
NC_004463:1369165:139094013909401391659720Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein3e-0858.9
NC_014364:3707311:372723137272313728010780Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeregulatory protein GntR HTH4e-0858.5
CP002185:4791811:481706548170654817790726Escherichia coli W, complete genomeDNA-binding transcriptional repressor4e-0858.5
NC_008253:4817864:485861648586164859389774Escherichia coli 536, complete genomeuxu operon transcriptional regulator5e-0858.2
NC_007613:4403070:442852244285224429295774Shigella boydii Sb227, complete genomeregulator for uxu operon5e-0858.2
NC_011745:5114500:513677251367725137545774Escherichia coli ED1a chromosome, complete genomeDNA-binding transcriptional repressor UxuR5e-0858.2
NC_014624:1010193:101191310119131012617705Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator4e-0858.2
NC_007946:4875997:491812649181264918899774Escherichia coli UTI89, complete genomeUxuR uxu operon transcriptional regulator4e-0858.2
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator7e-0857.8
NC_021177:4124839:413883841388384139617780Streptomyces fulvissimus DSM 40593, complete genomekorSA, regulatory protein6e-0857.8
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator6e-0857.8
NC_015389:809474:830620830620831354735Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family6e-0857.8
NC_009617:3647500:366042136604213661161741Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_012214:897206:915170915170915934765Erwinia pyrifoliae Ep1/96, complete genomePyruvate dehydrogenase complex repressor9e-0857.4
NC_018515:3600869:362844736284473629145699Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator9e-0857.4
NC_011740:2737467:274186427418642742535672Escherichia fergusonii ATCC 35469, complete genomeputative gntR family regulatory protein9e-0857.4
NC_013171:75110:957689576896469702Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, GntR family1e-0757
NC_015376:2061990:208370120837012084468768Burkholderia gladioli BSR3 chromosome chromosome 2, completeTranscriptional regulator1e-0757
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein1e-0757
NC_016114:3575955:358320535832053583984780Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_019673:1420198:143062914306291431012384Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-0757
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH1e-0757
NC_013595:9547254:956146795614679561802336Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family1e-0756.6
NC_014498:99015:117301117301118044744Streptococcus pneumoniae 670-6B chromosome, complete genomeGntR family transcriptional regulator1e-0756.6
NC_010380:124655:142940142940143683744Streptococcus pneumoniae Hungary19A-6, complete genometranscriptional regulator, GntR family protein1e-0756.6
NC_007644:1352794:135596513559651356696732Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, GntR family2e-0756.2
NC_014210:723719:733347733347734111765Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family2e-0756.2
NC_013971:817284:839648839648840412765Erwinia amylovora ATCC 49946 chromosome, complete genomepyruvate dehydrogenase complex repressor3e-0755.8
NC_021177:4221309:423668742366874237553867Streptomyces fulvissimus DSM 40593, complete genomeGntR-family transcriptional regulator3e-0755.8
NC_006322:1994000:1999578199957820007441167Bacillus licheniformis ATCC 14580, complete genomeAraR2e-0755.8
NC_013595:9547254:956468295646829565155474Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family3e-0755.5
NC_010694:891967:909868909868910632765Erwinia tasmaniensis, complete genomePyruvate dehydrogenase complex repressor3e-0755.5
NC_015145:3236445:327180532718053272530726Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator3e-0755.5
NC_013510:5499447:551960755196075520026420Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family3e-0755.5
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein4e-0755.5
NC_013235:682902:696087696087696872786Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, GntR family5e-0755.1
NC_019673:7797666:780755578075557808226672Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, GntR family5e-0755.1
NC_012880:1091486:111621711162171116951735Dickeya dadantii Ech703, complete genomeGntR domain protein4e-0755.1
NC_011832:913994:952978952978953670693Candidatus Methanosphaerula palustris E1-9c, complete genomeGntR domain protein4e-0755.1
NC_015145:3657103:367579336757933676560768Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator4e-0755.1
NC_013595:5221330:523280552328055233494690Streptosporangium roseum DSM 43021, complete genomeGntR family transcriptional regulator4e-0755.1
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein5e-0754.7
NC_014323:4619344:464992446499244650634711Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein6e-0754.7
NC_014364:394899:435427435427436113687Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein7e-0754.3
NC_020291:5093138:511164951116495112383735Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeregulatory protein GntR, HTH8e-0754.3
NC_021182:3525523:354004635400463540753708Clostridium pasteurianum BC1, complete genometranscriptional regulator1e-0653.9
NC_018515:3169973:318893631889363189691756Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator1e-0653.9
NC_014666:7152782:716610971661097166882774Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, GntR family1e-0653.9
NC_003888:3602753:360891636089163609695780Streptomyces coelicolor A3(2), complete genomekorSA, regulatory protein8e-0753.9
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein1e-0653.5
NC_009381:2731965:275373427537342754414681Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulatory protein1e-0653.5
NC_015389:1977736:198394319839431984632690Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family2e-0653.1
NC_020133:5485528:549970854997085500487780Mycobacterium liflandii 128FXT, complete genomeregulatory protein2e-0653.1
NC_015314:89815:101357101357102130774Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, completeGntR domain-containing protein2e-0652.8
NC_008268:4669530:469303346930334693788756Rhodococcus sp. RHA1, complete genometranscriptional regulator, GntR family2e-0652.8
NC_003888:6103534:613628961362896137068780Streptomyces coelicolor A3(2), complete genometranscriptional regulator2e-0652.8
NC_003155:4592000:462092046209204621708789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator2e-0652.8
NC_013093:7437033:745068174506817451064384Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family2e-0652.4
NC_016948:678939:688007688007688786780Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator3e-0652.4
NC_014815:6779538:679056667905666791432867Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family3e-0652
NC_014391:16188:244592445925325867Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeregulatory protein GntR HTH3e-0652
NC_013595:151500:158906158906159691786Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family4e-0652
NC_003888:4613000:462376646237664624524759Streptomyces coelicolor A3(2), complete genomeGntR-family regulatory protein5e-0651.6
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family5e-0651.6
NC_009953:1799416:180600218060021806868867Salinispora arenicola CNS-205 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_013929:5248000:526121052612105261998789Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator4e-0651.6
NC_007802:3575739:361456536145653615329765Jannaschia sp. CCS1, complete genomeGntR-like7e-0651.2
NC_015957:1070500:107590210759021076678777Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_003155:4906639:491297149129714913759789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator6e-0651.2
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator6e-0651.2
NC_015389:1782825:179971917997191800444726Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family6e-0651.2
NC_016947:666627:675648675648676442795Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein7e-0650.8
NC_015434:228912:238390238390238791402Verrucosispora maris AB-18-032 chromosome, complete genomeGntR family transcriptional regulator7e-0650.8
NC_016582:5393568:540514154051415405914774Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator8e-0650.8
NC_016027:2512297:252258525225852523292708Gluconacetobacter xylinus NBRC 3288, complete genomeGntR family transcriptional regulator9e-0650.8