Pre_GI: BLASTP Hits

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Query: NC_003305:1743939:1761331 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1761331, End: 1762212, Length: 882

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:304962:312545312545313426882Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein4e-166583
NC_015508:251354:255881255881256765885Agrobacterium sp. H13-3 chromosome linear, complete sequenceputative glycosyltransferase1e-113409
NC_012526:2431388:244813924481392449071933Deinococcus deserti VCD115, complete genomeputative glycosyl transferase5e-2098.6
NC_014216:2054860:205693520569352057861927Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeglycosyl transferase family 26e-2098.2
NC_004129:2234851:224853122485312249430900Pseudomonas fluorescens Pf-5, complete genomeglycosyl transferase, group 2 family protein3e-1892.4
NC_002977:652481:653841653841654776936Methylococcus capsulatus str. Bath, complete genomeglycosyl transferase, group 2 family protein6e-1891.7
NC_007947:2140000:215546321554632156431969Methylobacillus flagellatus KT, complete genomeglycosyl transferase, family 21e-1790.5
NC_015731:447411:451561451561452520960Nitrosomonas sp. Is79A3 chromosome, complete genomeglycosyl transferase family 25e-1788.6
NC_006361:2534192:254761825476182548484867Nocardia farcinica IFM 10152, complete genomeputative glycosyltransferase5e-1788.6
NC_011901:2466360:248138224813822482344963Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeglycosyltransferase1e-1687
NC_010794:303203:303203303203304162960Methylacidiphilum infernorum V4, complete genomePredicted glycosyltransferase4e-1685.5
NC_016884:2194419:221097222109722211805834Sulfobacillus acidophilus DSM 10332 chromosome, complete genomefamily 2 glycosyl transferase2e-1583.2
NC_015757:1329012:133922013392201340053834Sulfobacillus acidophilus TPY chromosome, complete genomeglycosyltransferase, group 1 family protein2e-1583.2
NC_015311:1612366:162440016244001625170771Prevotella denticola F0289 chromosome, complete genomeglycosyltransferase group 2 family protein5e-1582
NC_011830:4722607:474708147470814747953873Desulfitobacterium hafniense DCB-2, complete genomeglycosyl transferase family 26e-1581.6
NC_016589:2312570:231663723166372317500864Burkholderia sp. YI23 chromosome 1, complete sequenceglycosyl transferase family protein7e-1581.3
NC_007645:2294553:230917923091792310168990Hahella chejuensis KCTC 2396, complete genomepredicted glycosyltransferase8e-1581.3
NC_009052:3381943:339592733959273396844918Shewanella baltica OS155, complete genomeglycosyl transferase, family 21e-1480.5
NC_007969:726086:746640746640747560921Psychrobacter cryohalolentis K5, complete genomeglycosyl transferase, family 22e-1480.1
NC_007973:2952004:296501829650182965914897Ralstonia metallidurans CH34 chromosome 1, complete sequenceglycosyl transferase, family 23e-1479.3
NC_009523:5298488:530495453049545305886933Roseiflexus sp. RS-1 chromosome, complete genomeglycosyl transferase family protein4e-1479
NC_018681:5551000:558328955832895584116828Nocardia brasiliensis ATCC 700358 chromosome, complete genomeglycosyltransferase4e-1478.6
NC_008358:798390:8246928246928257351044Hyphomonas neptunium ATCC 15444, complete genomeglycosyl transferase, group 2 family protein5e-1478.6
NC_011420:365505:3718263718263728391014Rhodospirillum centenum SW, complete genomeglycosyl transferase, family 2, putative9e-1477.8
NC_013665:231023:2453232453232481662844Methanocella paludicola SANAE, complete genomehypothetical protein1e-1377
NC_002939:3303989:3320350332035033275557206Geobacter sulfurreducens PCA, complete genomeglycosyl transferase, group 1/2 family protein3e-1376.3
NC_014311:2781898:279048127904812791308828Ralstonia solanacearum PSI07 chromosome, complete genomeglycosyltransferase protein3e-1376.3
NC_019940:3341794:335627233562723357225954Thioflavicoccus mobilis 8321 chromosome, complete genomeglycosyltransferase3e-1375.9
NC_014365:1094516:111038911103891111384996Desulfarculus baarsii DSM 2075 chromosome, complete genomeglycosyl transferase family 24e-1375.5
NC_014539:860402:881760881760882605846Burkholderia sp. CCGE1003 chromosome 1, complete sequencefamily 2 glycosyl transferase4e-1375.5
NC_013406:6494079:650126265012626502173912Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 2 glycosyl transferase5e-1375.1
NC_016641:834500:836299836299837207909Paenibacillus terrae HPL-003 chromosome, complete genomefamily 2 glycosyl transferase6e-1375.1
NC_017059:31564:327823278233762981Rhodospirillum photometricum DSM 122, complete genomeglycosyltransferase7e-1374.7
NC_014355:3398033:3411960341196034158173858Candidatus Nitrospira defluvii, complete genomeputative methyltransferase and glycosyltransferase2e-1273.2
NC_014408:682689:6921116921116931241014Methanothermobacter marburgensis str. Marburg chromosome, completeglycosyltransferase3e-1272.8
NC_017047:1862893:188567018856701886488819Rahnella aquatilis HX2 chromosome, complete genomeglycosyltransferase3e-1272.8
NC_005966:69689:803678036781164798Acinetobacter sp. ADP1, complete genomeputative glycosyl transferase family 22e-1272.8
NC_011420:852643:8692558692558718132559Rhodospirillum centenum SW, complete genomeglycosyl transferase family protein3e-1272.4
NC_013946:2050871:207013520701352070959825Meiothermus ruber DSM 1279 chromosome, complete genomefamily 2 glycosyl transferase3e-1272.4
NC_010505:1264758:1274899127489912769502052Methylobacterium radiotolerans JCM 2831, complete genomeglycosyl transferase family 24e-1272.4
NC_009051:165102:170793170793171749957Methanoculleus marisnigri JR1, complete genomeglycosyl transferase, family 26e-1271.6
NC_014836:2723060:2733224273322427342941071Desulfurispirillum indicum S5 chromosome, complete genomefamily 2 glycosyl transferase2e-1170.1
NC_020304:3751710:376000937600093760938930Desulfocapsa sulfexigens DSM 10523, complete genomeputative glycosyltransferase2e-1169.7
NC_012522:5952307:596563259656325966597966Rhodococcus opacus B4, complete genomeputative glycosyltransferase4e-1168.9
NC_007651:1662558:1675409167540916772501842Burkholderia thailandensis E264 chromosome I, complete sequenceputative glycosyl transferase4e-1168.9
NC_017079:261736:2810672810672823981332Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative glycosyltransferase5e-1168.6
NC_018643:320197:321080321080321982903Alpha proteobacterium HIMB5 chromosome, complete genomeglycosyltransferase group 25e-1168.6
NC_015311:1101761:1124018112401811252231206Prevotella denticola F0289 chromosome, complete genomeglycosyltransferase group 2 family protein8e-1168.2
NC_009076:3045139:3051434305143430532751842Burkholderia pseudomallei 1106a chromosome I, complete sequenceglycosyl transferase, group 2 family protein9e-1167.8
NC_006350:3195165:3201460320146032033011842Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative glycosyl transferase9e-1167.8
NC_009074:3029716:3036010303601030378511842Burkholderia pseudomallei 668 chromosome I, complete sequenceglycosyl transferase, group 2 family protein9e-1167.8
NC_007434:3452985:3460336346033634621771842Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative glycosyl transferase9e-1167.8
NC_008836:2780339:2794560279456027964011842Burkholderia mallei NCTC 10229 chromosome II, complete sequenceputative glycosyl transferase9e-1167.8
NC_009080:1815768:1821823182182318236641842Burkholderia mallei NCTC 10247 chromosome II, complete sequenceputative glycosyl transferase9e-1167.8
NC_008785:914411:9286029286029304731872Burkholderia mallei SAVP1 chromosome II, complete sequenceputative glycosyl transferase9e-1167.8
NC_006348:2071749:2076564207656420784051842Burkholderia mallei ATCC 23344 chromosome 1, complete sequence9e-1167.8
NC_013093:7437033:7437033743703374395012469Actinosynnema mirum DSM 43827, complete genomeglycosyl transferase family 28e-1167.8
NC_015416:1039144:1044423104442310455171095Methanosaeta concilii GP-6 chromosome, complete genomeglycosyltransferase1e-1067.4
NC_012108:3391190:3407723340772334110583336Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein1e-1067
NC_005070:617448:6244076244076273492943Synechococcus sp. WH 8102, complete genomepossible glycosyltransferase2e-1067
NC_013757:368973:402975402975403928954Geodermatophilus obscurus DSM 43160, complete genomeglycosyl transferase family 22e-1066.6
NC_012883:1:390439044902999Thermococcus sibiricus MM 739, complete genomeprobable glycosyltransferase2e-1066.2
NC_015663:4950000:497413149741314974946816Enterobacter aerogenes KCTC 2190 chromosome, complete genomeglycosyltransferase3e-1065.9
NC_014365:1094516:112556311255631126483921Desulfarculus baarsii DSM 2075 chromosome, complete genomeglycosyl transferase family 23e-1065.9
NC_016051:1429800:1443740144374014447951056Thermococcus sp. AM4 chromosome, complete genomeglycosyltransferase4e-1065.9
NC_009482:156171:160468160468161358891Synechococcus sp. RCC307 chromosome, complete genomeglyscosytransferase4e-1065.9
NC_010814:794211:797682797682798524843Geobacter lovleyi SZ, complete genomeglycosyl transferase family 25e-1065.1
NC_007348:2115152:212396121239612124905945Ralstonia eutropha JMP134 chromosome 2, complete sequenceGlycosyl transferase, family 26e-1065.1
NC_014722:2260489:226564522656452266466822Burkholderia rhizoxinica HKI 454, complete genomeglycosyltransferase8e-1064.7
NC_013173:133466:1381141381141393461233Desulfomicrobium baculatum DSM 4028, complete genomeglycosyl transferase family 21e-0964.3
NC_004342:1648977:166417516641751665149975Leptospira interrogans serovar Lai str. 56601 chromosome I,glycosyl transferase9e-1064.3
NC_018876:2305659:2332099233209923331511053Methanolobus psychrophilus R15 chromosome, complete genomeglycosyltransferase9e-1064.3
NC_009615:322107:337475337475338380906Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycosyl transferase family protein1e-0963.9
NC_016609:606000:6221546221546231821029Niastella koreensis GR20-10 chromosome, complete genomefamily 2 glycosyl transferase1e-0963.9
NC_016935:634500:659705659705660568864Paenibacillus mucilaginosus 3016 chromosome, complete genomefamily 2 glycosyl transferase2e-0963.5
NC_015596:1556007:158395815839581584911954Sinorhizobium meliloti AK83 chromosome 2, complete sequencefamily 2 glycosyl transferase2e-0963.2
NC_015677:896673:912910912910913611702Ramlibacter tataouinensis TTB310 chromosome, complete genomeb-glycosyltransferase3e-0962.8
NC_011026:2450325:246866524686652469486822Chloroherpeton thalassium ATCC 35110, complete genomeglycosyl transferase family 23e-0962.8
NC_010424:1778459:1786962178696217879841023Candidatus Desulforudis audaxviator MP104C, complete genomeglycosyl transferase, family 23e-0962.8
NC_011060:244949:249633249633250472840Pelodictyon phaeoclathratiforme BU-1, complete genomeglycosyl transferase family 23e-0962.8
NC_000868:1130944:1146209114620911472671059Pyrococcus abyssi GE5, complete genomerhamnosyl transferase related protein3e-0962.8
NC_008609:3672653:3675024367502436788303807Pelobacter propionicus DSM 2379, complete genomeglycosyl transferase, family 24e-0962.4
NC_014624:3561756:357524235752423576216975Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein4e-0962.4
NC_007347:767455:7774837774837808033321Ralstonia eutropha JMP134 chromosome 1, complete sequenceGlycosyl transferase, family 2:Glycosyl transferase, group 15e-0962
NC_012969:142000:147058147058147825768Methylovorus glucosetrophus SIP3-4 chromosome, complete genomefamily 2 glycosyl transferase5e-0962
NC_016935:634500:655314655314656294981Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein5e-0962
NC_014976:1:4263426356361374Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein9e-0961.2
NC_013172:330827:3308273308273327551929Brachybacterium faecium DSM 4810, complete genomepredicted glycosyltransferase8e-0961.2
NC_013665:231023:239170239170240123954Methanocella paludicola SANAE, complete genomeputative glycosyltransferase8e-0961.2
NC_017187:1683619:169868616986861699606921Arcobacter butzleri ED-1, complete genomeputative glycosyltransferase1e-0860.8
NC_008639:378181:3876833876833906672985Chlorobium phaeobacteroides DSM 266, complete genomeglycosyl transferase, family 21e-0860.8
NC_013757:368973:379348379348380301954Geodermatophilus obscurus DSM 43160, complete genomeglycosyl transferase family 21e-0860.5
NC_015566:1659288:170035217003521701194843Serratia sp. AS12 chromosome, complete genomefamily 2 glycosyl transferase2e-0860.1
NC_015567:1660462:170036417003641701206843Serratia sp. AS9 chromosome, complete genomefamily 2 glycosyl transferase2e-0860.1
NC_007643:2722265:2722265272226527277785514Rhodospirillum rubrum ATCC 11170, complete genomeGlycosyl transferase2e-0860.1
NC_015160:3585354:360138936013893602210822Odoribacter splanchnicus DSM 20712 chromosome, complete genomeglycosyl transferase family 23e-0859.7
NC_013967:1878045:189585218958521896775924Haloferax volcanii DS2 chromosome, complete genomerhamnosyl transferase homolog2e-0859.7
NC_011026:3009500:3031135303113530321631029Chloroherpeton thalassium ATCC 35110, complete genomeglycosyl transferase family 23e-0859.3
NC_013173:3679326:369604036960403696786747Desulfomicrobium baculatum DSM 4028, complete genomeglycosyl transferase family 23e-0859.3
NC_013199:2058857:207518420751842075966783Lactobacillus rhamnosus Lc 705, complete genomeglycosyltransferase (WelF)3e-0859.3
NC_012791:821371:848844848844849602759Variovorax paradoxus S110 chromosome 1, complete genomeglycosyl transferase family protein4e-0858.9
NC_004129:6240904:6269218626921862719292712Pseudomonas fluorescens Pf-5, complete genomeglycosyl transferase, group 2 family protein6e-0858.5
NC_015635:5154730:517531251753125176187876Microlunatus phosphovorus NM-1, complete genomeputative glycosyltransferase6e-0858.5
NC_009614:3748950:375166537516653752477813Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycosyl transferase family protein5e-0858.5
NC_015942:3147514:3147514314751431495592046Acidithiobacillus ferrivorans SS3 chromosome, complete genomegroup 1 glycosyl transferase5e-0858.5
NC_011565:1054414:1059391105939110604011011Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,putative glycosyltransferase5e-0858.5
NC_014098:850000:8606898606898626331945Bacillus tusciae DSM 2912 chromosome, complete genome5e-0858.5
NC_011529:1722829:174162317416231742618996Thermococcus onnurineus NA1, complete genomeglycosyltransferase1e-0757.8
NC_011886:3274048:329150132915013292409909Arthrobacter chlorophenolicus A6, complete genomeglycosyltransferase-like protein1e-0757.4
NC_019897:4131337:413439041343904135349960Thermobacillus composti KWC4 chromosome, complete genomeglycosyltransferase1e-0757.4
NC_014828:107802:1252851252851266911407Ethanoligenens harbinense YUAN-3 chromosome, complete genomeglycosyl transferase family 22e-0757
NC_013093:1909305:1923276192327619253932118Actinosynnema mirum DSM 43827, complete genomeglycosyl transferase family 21e-0757
NC_011138:1005872:1019056101905610216382583Alteromonas macleodii 'Deep ecotype', complete genomeglycosyltransferase1e-0757
NC_016070:1178462:118755311875531188530978Thermoproteus tenax Kra 1, complete genomeglycosyltransferase2e-0756.6
NC_017094:1339311:1353534135353413547301197Leptospirillum ferrooxidans C2-3, complete genomeglycosyl transferase, group 2 family3e-0756.2
NC_010814:3621215:3621215362121536255224308Geobacter lovleyi SZ, complete genomeglycosyl transferase family 23e-0756.2
NC_014816:2446236:2475454247545424788703417Asticcacaulis excentricus CB 48 chromosome 1, complete sequenceglycosyl transferase family 23e-0756.2
NC_009648:2699739:271476627147662715596831Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeglycosyltransferase3e-0756.2
NC_007517:2632233:264953126495312650343813Geobacter metallireducens GS-15, complete genomeGlycosyl transferase, family 23e-0756.2
NC_015563:5843703:584665458466545847427774Delftia sp. Cs1-4 chromosome, complete genomeglycosyl transferase family protein3e-0755.8
NC_014624:3561756:357430535743053575162858Eubacterium limosum KIST612 chromosome, complete genomeglycosyltransferase/rhamnosyltransferase4e-0755.8
NC_013235:4618908:462144446214444622367924Nakamurella multipartita DSM 44233, complete genomeglycosyl transferase family 24e-0755.8
NC_014816:2446236:2455072245507224564031332Asticcacaulis excentricus CB 48 chromosome 1, complete sequenceglycosyl transferase family 25e-0755.5
NC_015953:3313000:331338733133873314265879Streptomyces sp. SirexAA-E chromosome, complete genomefamily 2 glycosyl transferase5e-0755.5
NC_011894:6001144:6004708600470860057181011Methylobacterium nodulans ORS 2060, complete genomeglycosyl transferase family 25e-0755.5
NC_007951:769500:769502769502770347846Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative glycosyl transferase4e-0755.5
NC_009665:3460906:347407434740743474931858Shewanella baltica OS185 chromosome, complete genomeglycosyl transferase family protein5e-0755.1
NC_015320:470988:4830304830304840341005Archaeoglobus veneficus SNP6 chromosome, complete genomefamily 2 glycosyl transferase8e-0754.7
NC_013410:2519441:253105525310552531921867Fibrobacter succinogenes subsp. succinogenes S85 chromosome,family 2 glycosyl transferase9e-0754.3
NC_015186:2063960:207294720729472073825879Acidiphilium multivorum AIU301, complete genomeputative glycosyltransferase9e-0754.3
NC_016629:4081500:4085705408570540870121308Desulfovibrio africanus str. Walvis Bay chromosome, completefamily 2 glycosyl transferase1e-0654.3
NC_020210:3169258:3181649318164931828181170Geobacillus sp. GHH01, complete genomeglycosyl transferase group 21e-0654.3
NC_009667:2860818:286961428696142870483870Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceglycosyltransferase-like protein1e-0653.9
NC_007651:1662558:167732316773231678153831Burkholderia thailandensis E264 chromosome I, complete sequenceglycosyl transferase, group 2 family protein, putative1e-0653.9
NC_010999:2155714:216296721629672163833867Lactobacillus casei, complete genomePutative rhamnosyl transferase1e-0653.9
NC_015850:217495:230368230368231246879Acidithiobacillus caldus SM-1 chromosome, complete genomeglycosyl transferase family protein2e-0653.1
NC_013757:3753241:377871837787183779713996Geodermatophilus obscurus DSM 43160, complete genomeglycosyl transferase family 22e-0653.1
NC_010125:3467379:3473768347376834767342967Gluconacetobacter diazotrophicus PAl 5, complete genomeputative glycosyl transferase4e-0652.4
NC_014973:2945942:2966468296646829685072040Geobacter sp. M18 chromosome, complete genomegroup 1 glycosyl transferase5e-0652
NC_013406:1707570:172495017249501725678729Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 2 glycosyl transferase7e-0651.6
NC_007347:767455:784721784721785482762Ralstonia eutropha JMP134 chromosome 1, complete sequenceglycosyl transferase, family 28e-0651.2
NC_015955:581685:5917135917135927591047Halophilic archaeon DL31 plasmid phalar01, complete sequencefamily 2 glycosyl transferase9e-0651.2