Pre_GI: BLASTP Hits

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Query: NC_003305:1743939:1758814 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1758814, End: 1760100, Length: 1287

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:304962:3135813135813159442364Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein0838
NC_015508:251354:2577452577452608133069Agrobacterium sp. H13-3 chromosome linear, complete sequenceglycosyltransferase3e-132472
NC_002977:2719774:2743576274357627453121737Methylococcus capsulatus str. Bath, complete genomeglycosyl transferase, group 1 family protein1e-30134
NC_016935:634500:6504506504506542833834Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-23110
NC_012793:3096095:3134851313485131359601110Geobacillus sp. WCH70, complete genomeglycosyl transferase group 13e-1893.6
NC_012108:2220983:2244433224443322455661134Desulfobacterium autotrophicum HRM2, complete genomeRfaG22e-1170.5
NC_014656:1161188:1177854117785411789961143Bifidobacterium longum subsp. longum BBMN68 chromosome, completegroup 1 glycosyl transferase5e-1169.3
NC_014219:3254268:3293707329370732948041098Bacillus selenitireducens MLS10 chromosome, complete genomeglycosyl transferase group 12e-1067.4
NC_015052:471944:4832554832554843911137Bifidobacterium longum subsp. infantis 157F, complete genomeglycosyltransferase5e-0962.8
NC_011725:5169135:5187606518760651887391134Bacillus cereus B4264 chromosome, complete genomegroup 1 glycosyl transferase6e-0962.4
NC_011529:1722829:1735946173594617371211176Thermococcus onnurineus NA1, complete genomeglycosyltransferase1e-0861.6
NC_015144:997587:9988359988359999861152Weeksella virosa DSM 16922 chromosome, complete genomeglycosyl transferase group 11e-0861.2
NC_012778:137064:1509551509551520701116Eubacterium eligens ATCC 27750, complete genomehypothetical protein2e-0860.8
NC_008618:1729739:1746433174643317475781146Bifidobacterium adolescentis ATCC 15703, complete genomecapsular polysaccharide biosynthesis proteinCps4H2e-0860.8
NC_016943:336550:3385333385333397711239Blastococcus saxobsidens DD2, complete genomeLipopolysaccharide biosynthesis protein2e-0860.5
NC_010994:3477000:3482313348231334835961284Rhizobium etli CIAT 652, complete genomeputative glycosyltransferase protein3e-0860.1
NC_011761:1155636:1168849116884911700211173Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeglycoside hydrolase3e-0860.1
NC_009051:657000:6648036648036658491047Methanoculleus marisnigri JR1, complete genomeglycosyl transferase, group 14e-0859.7
NC_015389:1298689:1315763131576313169291167Coriobacterium glomerans PW2 chromosome, complete genomeglycosyl transferase group 14e-0859.7
NC_006177:2883476:2902949290294929040281080Symbiobacterium thermophilum IAM 14863, complete genomeputative glycosyl transferase5e-0859.3
NC_015573:1729057:1746183174618317473641182Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomegroup 1 glycosyl transferase5e-0859.3
NC_008740:2905990:2940280294028029414461167Marinobacter aquaeolei VT8, complete genomeglycosyl transferase, group 18e-0858.9
NC_015914:917124:9158479158479171361290Cyclobacterium marinum DSM 745 chromosome, complete genomegroup 1 glycosyl transferase9e-0858.5
NC_018876:703633:7134267134267145531128Methanolobus psychrophilus R15 chromosome, complete genomeglycosyl transferase, group 11e-0758.2
NC_006513:3486558:3499372349937235005201149Azoarcus sp. EbN1, complete genomepredicted glycosyl transferase2e-0757.8
NC_014935:1389000:1392139139213913932211083Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeglycosyl transferase group 11e-0757.8
NC_020272:599064:6238806238806250161137Bacillus amyloliquefaciens IT-45, complete genomegroup 1 glycosyl transferase2e-0757.4
NC_014166:2217790:2241871224187122429351065Arcobacter nitrofigilis DSM 7299 chromosome, complete genomegroup 1 glycosyl transferase2e-0757.4
NC_017506:1996652:2026798202679820279191122Marinobacter adhaerens HP15 chromosome, complete genomeglycosyltransferase3e-0756.6
NC_014974:246404:2570712570712582311161Thermus scotoductus SA-01 chromosome, complete genomeglycosyltransferase4e-0756.6
NC_015680:755500:7743017743017754461146Pyrococcus yayanosii CH1 chromosome, complete genomeglycosyltransferase4e-0756.2
NC_015554:817500:8341868341868353491164Alteromonas sp. SN2 chromosome, complete genomegroup 1 glycosyl transferase6e-0755.8
NC_016943:336550:3454563454563466221167Blastococcus saxobsidens DD2, complete genomeputative galactosyltransferase6e-0755.8
NC_011770:2046490:2065182206518220663121131Pseudomonas aeruginosa LESB58, complete genomeORF_12; similar to Glycosyl transferases group 17e-0755.5
NC_019974:2960872:2974690297469029758171128Natronococcus occultus SP4, complete genomeglycosyltransferase8e-0755.5
NC_014377:480158:4959934959934971351143Thermosediminibacter oceani DSM 16646 chromosome, complete genomeglycosyl transferase group 11e-0655.1
NC_014484:1690272:171419017141901714918729Spirochaeta thermophila DSM 6192 chromosome, complete genomeglycosyl transferase, group 1 family1e-0655.1
NC_012779:1286500:1298103129810312992031101Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-0655.1
NC_014727:1832144:1842736184273618438541119Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,glycosyltransferase1e-0654.7
NC_018876:2403892:2415812241581224168911080Methanolobus psychrophilus R15 chromosome, complete genomeglycosyl transferase, group 11e-0654.7
NC_019904:3072241:3083989308398930851221134Echinicola vietnamensis DSM 17526 chromosome, complete genomeglycosyltransferase1e-0654.7
NC_008054:1617544:1630740163074016318581119Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeEpsIIH, Putative glycosyltransferase2e-0654.3
NC_008529:1634403:1645926164592616470441119Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeGlycosyltransferase2e-0654.3
NC_014370:1117283:1129480112948011306341155Prevotella melaninogenica ATCC 25845 chromosome chromosome I,glycosyltransferase, group 1 family protein2e-0654.3
NC_008740:2905990:2941443294144329426301188Marinobacter aquaeolei VT8, complete genomeglycosyl transferase, group 12e-0654.3
NC_014973:1767798:1767798176779817689221125Geobacter sp. M18 chromosome, complete genomegroup 1 glycosyl transferase2e-0653.9
NC_007907:3722500:3749265374926537503771113Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0653.9
NC_018691:1864796:1888008188800818899241917Alcanivorax dieselolei B5 chromosome, complete genomePutative glycosyltransferase2e-0653.9
NC_013889:1623697:1644668164466816456871020Thioalkalivibrio sp. K90mix chromosome, complete genomeglycosyl transferase group 12e-0653.9
NC_003869:948000:9528129528129539361125Thermoanaerobacter tengcongensis MB4, complete genomepredicted glycosyltransferase4e-0653.1
NC_016070:1178462:1204843120484312059821140Thermoproteus tenax Kra 1, complete genomeLPS biosynthesis glycosyltransferase4e-0653.1
NC_018876:2403892:2412620241262024137531134Methanolobus psychrophilus R15 chromosome, complete genome1,2-diacylglycerol 3-glucosyltransferase4e-0653.1
NC_007530:1459412:1467593146759314687381146Bacillus anthracis str. 'Ames Ancestor', complete genomeglycosyl transferase, group 1 family protein6e-0652.8
NC_005945:1459357:1467547146754714686921146Bacillus anthracis str. Sterne, complete genomeglycosyl transferase, group 1 family protein6e-0652.8
NC_015186:2063960:2063960206396020650661107Acidiphilium multivorum AIU301, complete genomeputative glycosyltransferase5e-0652.8
NC_004347:3303957:3314278331427833153991122Shewanella oneidensis MR-1, complete genomeglycosyl transferase, group 1 family protein4e-0652.8
NC_013222:2209340:2210900221090022120781179Robiginitalea biformata HTCC2501, complete genomeputative Capsular polysaccharide biosynthesis glycosyl transferase4e-0652.8
NC_000853:648075:6561406561406573061167Thermotoga maritima MSB8, complete genomelipopolysaccharide biosynthesis protein, putative6e-0652.4
NC_014315:3004125:3031977303197730331791203Nitrosococcus watsoni C-113 chromosome, complete genomeglycosyl transferase group 17e-0652.4
NC_017082:6444522:6458285645828564596971413Bradyrhizobium sp. S23321, complete genomeputative glycosyltransferase8e-0652
NC_010995:4083960:4086666408666640877961131Cellvibrio japonicus Ueda107, complete genomeglycosyl transferase, putative, gt4B8e-0652
NC_013501:990022:1006927100692710080721146Rhodothermus marinus DSM 4252, complete genomeglycosyl transferase group 19e-0652