Pre_GI: BLASTP Hits

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Query: NC_003305:1743939:1754093 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1754093, End: 1755946, Length: 1854

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:304962:3188123188123206651854Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein01204
NC_002678:6061448:6071763607176360737571995Mesorhizobium loti MAFF303099, complete genomeputative O-antigen methyl transferase4e-145515
NC_006350:3195165:3203353320335332050771725Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative O-antigen methyl transferase5e-101369
NC_009076:3045139:3053327305332730550511725Burkholderia pseudomallei 1106a chromosome I, complete sequenceglycosyl transferase, group 2 family protein3e-101369
NC_006348:2071749:2078457207845720801811725Burkholderia mallei ATCC 23344 chromosome 1, complete sequenceO-antigen methyl transferase, putative3e-101369
NC_008785:914411:9268569268569285801725Burkholderia mallei SAVP1 chromosome II, complete sequenceputative O-antigen methyl transferase3e-101369
NC_009080:1815768:1823716182371618254401725Burkholderia mallei NCTC 10247 chromosome II, complete sequenceputative O-antigen methyl transferase3e-101369
NC_009074:3029716:3037903303790330396271725Burkholderia pseudomallei 668 chromosome I, complete sequenceglycosyl transferase, group 2 family protein3e-101369
NC_008836:2780339:2792784279278427945081725Burkholderia mallei NCTC 10229 chromosome II, complete sequenceputative O-antigen methyl transferase3e-101369
NC_007434:3452985:3462229346222934639111683Burkholderia pseudomallei 1710b chromosome I, complete sequenceputative O-antigen methyl transferase1e-100367
NC_007651:1662558:1673675167367516753571683Burkholderia thailandensis E264 chromosome I, complete sequenceputative O-antigen methyl transferase3e-99363
NC_015942:3147514:3170585317058531739263342Acidithiobacillus ferrivorans SS3 chromosome, complete genomefamily 2 glycosyl transferase2e-1377.8
NC_013406:6494079:6511038651103865143583321Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 2 glycosyl transferase5e-1376.6
NC_012968:1108687:112167111216711122519849Methylotenera mobilis JLW8, complete genomeMethyltransferase type 128e-1169.3
NC_012108:3391190:3407723340772334110583336Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein8e-1169.3
NC_008536:2717891:2724919272491927264451527Solibacter usitatus Ellin6076, complete genomeglycosyl transferase, family 26e-1066.2
NC_009715:1202242:121433912143391215082744Campylobacter curvus 525.92 chromosome, complete genomemethionine biosynthesis protein MetW2e-0964.7
NC_014479:2038348:205415220541522054859708Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative methyltransferase5e-0963.5
NC_011830:4722607:4735330473533047369611632Desulfitobacterium hafniense DCB-2, complete genomeMethyltransferase type 127e-0962.8
NC_015563:5843703:5847772584777258515753804Delftia sp. Cs1-4 chromosome, complete genomefamily 2 glycosyl transferase1e-0862
NC_007503:861668:8670158670158695162502Carboxydothermus hydrogenoformans Z-2901, complete genomeglycosyl transferase, group 2 family2e-0861.6
NC_014976:1:246624663173708Bacillus subtilis BSn5 chromosome, complete genomeputative methyltransferase3e-0860.5
NC_015138:4584846:4584846458484645887093864Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completefamily 2 glycosyl transferase4e-0860.5
NC_014828:107802:1252851252851266911407Ethanoligenens harbinense YUAN-3 chromosome, complete genomeglycosyl transferase family 25e-0860.1
NC_007796:3351962:3363497336349733645581062Methanospirillum hungatei JF-1, complete genomehypothetical protein2e-0757.8
NC_013665:231023:2453232453232481662844Methanocella paludicola SANAE, complete genomehypothetical protein2e-0757.8
NC_015726:2923969:2949779294977929518362058Cupriavidus necator N-1 chromosome 1, complete sequencefamily 2 glycosyl transferase8e-0756.2
NC_009051:165102:1732981732981762882991Methanoculleus marisnigri JR1, complete genomeglycosyl transferase, family 21e-0655.8
NC_008752:4589119:4592108459210845959713864Acidovorax avenae subsp. citrulli AAC00-1, complete genomeglycosyl transferase, family 21e-0655.8
NC_015850:1497998:150749615074961508275780Acidithiobacillus caldus SM-1 chromosome, complete genomeglycosyl transferase family protein2e-0654.7
NC_010001:3421710:3435346343534634367191374Clostridium phytofermentans ISDg, complete genomeglycosyl transferase family 26e-0653.1