Pre_GI: BLASTP Hits

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Query: NC_003304:2507000:2520075 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 2520075, End: 2520734, Length: 660

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003062:2506959:251996225199622520621660Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein2e-116417
NC_010994:3666651:368539136853913685993603Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, TetR family5e-39160
NC_007761:3564449:358390635839063584508603Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, TetR family9e-38156
NC_008380:4078670:409749440974944098096603Rhizobium leguminosarum bv. viciae 3841, complete genomeputative TetR family transcriptional regulator2e-39162
NC_003295:3421520:346908034690803469694615Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN4e-0755.1
NC_008463:4133700:414613741461374146754618Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator2e-0652.8
NC_015957:3067919:308703330870333087626594Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR2e-1272.4
NC_014500:842493:846764846764847381618Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator2e-0652.4
NC_016111:986936:998551998551999183633Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator3e-0652
NC_011988:1036618:104120510412051041873669Agrobacterium vitis S4 chromosome 2, complete genometranscriptional regulator TetR family9e-34143
NC_012850:3454270:347256334725633473165603Rhizobium leguminosarum bv. trifolii WSM1325, complete genometranscriptional regulator, TetR family2e-38159
NC_015183:2483653:250008725000872500746660Agrobacterium sp. H13-3 chromosome, complete genometranscriptional regulator, TetR family3e-92337
NC_009832:3500000:350540635054063505966561Serratia proteamaculans 568, complete genometranscriptional regulator, TetR family2e-0652.8