Pre_GI: BLASTP Hits

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Query: NC_003304:2507000:2512547 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 2512547, End: 2512669, Length: 123

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010994:4071131:407747740774774077595119Rhizobium etli CIAT 652, complete genome5S ribosomal RNA2e-1064.3
NC_012850:3454270:346063334606333460746114Rhizobium leguminosarum bv. trifolii WSM1325, complete genome5S ribosomal RNA9e-1062.4
NC_012850:4422966:443468544346854434798114Rhizobium leguminosarum bv. trifolii WSM1325, complete genome5S ribosomal RNA9e-1062.4
NC_012850:3867743:387549838754983875611114Rhizobium leguminosarum bv. trifolii WSM1325, complete genome5S ribosomal RNA9e-1062.4
NC_009668:1591290:159816015981601598273114Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence5S ribosomal RNA6e-0959.3
NC_009668:445134:462119462119462232114Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence5S ribosomal RNA6e-0959.3
NC_009667:1341000:135153713515371351650114Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence5S ribosomal RNA6e-0959.3
NC_009667:1076718:108931410893141089427114Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence5S ribosomal RNA6e-0959.3
NC_007958:4541110:454701945470194547138120Rhodopseudomonas palustris BisB5, complete genome5S ribosomal RNA3e-0857.4
NC_007958:396439:403348403348403467120Rhodopseudomonas palustris BisB5, complete genome5S ribosomal RNA3e-0857.4
NC_009720:1006201:101915310191531019266114Xanthobacter autotrophicus Py2, complete genome5S ribosomal RNA3e-0857.4
NC_009720:2143124:215559521555952155708114Xanthobacter autotrophicus Py2, complete genome5S ribosomal RNA3e-0857.4
NC_011666:1923776:193014719301471930260114Methylocella silvestris BL2, complete genome5S ribosomal RNA1e-0651.6
NC_011666:2435438:244244824424482442561114Methylocella silvestris BL2, complete genome5S ribosomal RNA1e-0651.6