Pre_GI: BLASTP Hits

Some Help

Query: NC_003228:3455405:3456672 Bacteroides fragilis NCTC 9343, complete genome

Start: 3456672, End: 3457184, Length: 513

Host Lineage: Bacteroides fragilis; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism can become an opportunistic pathogen, infecting anywhere in the body and causing abcess formation. Enterotoxigenic Bacterioides fragilis (ETBF) is associated with diarrheal diseases. Common gut bacterium. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Although only a minor component of the human gut microflora, this organism is a major component of clinical specimens and is the most common anaerobe isolated.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016776:3485688:348838334883833488895513Bacteroides fragilis 638R, complete genomeputative RNA polymerase sigma factor1e-85315
NC_015914:111382:129934129934130404471Cyclobacterium marinum DSM 745 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-24111
NC_014623:9363409:937033593703359370856522Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRNA polymerase ECF-type sigma factor5e-22103
NC_013730:2490000:249877424987742499262489Spirosoma linguale DSM 74, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1375.9
NC_008536:5192235:520608052060805206640561Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1168.9
NC_014393:4541000:454485545448554545400546Clostridium cellulovorans 743B chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1168.6
NC_008536:1778500:179700417970041797519516Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1168.6
NC_014033:1664500:168220716822071682704498Prevotella ruminicola 23 chromosome, complete genomeECF family RNA polymerase sigma-70 factor1e-0962.4
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0962
NC_021182:3409199:341352734135273414072546Clostridium pasteurianum BC1, complete genomeRNA polymerase sigma factor, sigma-70 family2e-0961.6
NC_015144:1576047:158985115898511590342492Weeksella virosa DSM 16922 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0961.6
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor4e-0960.8
NC_012560:2315350:232811423281142328680567Azotobacter vinelandii DJ, complete genomeRNA polymerase sigma-70 factor6e-0960.5
NC_021150:2315362:232812623281262328692567Azotobacter vinelandii CA6, complete genomeRNA polymerase sigma factor SigX6e-0960.5
NC_017186:6817904:683778768377876838761975Amycolatopsis mediterranei S699 chromosome, complete genomeRNA polymerase factor sigma-708e-0959.7
NC_014318:6817860:683774368377436838723981Amycolatopsis mediterranei U32 chromosome, complete genomeRNA polymerase sigma-70 factor, ECF subfamily8e-0959.7
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor8e-0959.7
NC_009012:3224000:322403932240393224593555Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0858.9
NC_016627:762000:776639776639777193555Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0858.5
NC_016627:689406:701226701226701768543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor3e-0858.2
NC_008536:3160540:318629731862973186758462Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0857.4
NC_015914:2769042:276844027684402769051612Cyclobacterium marinum DSM 745 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit5e-0857
NC_009012:2953638:301233430123343012897564Clostridium thermocellum ATCC 27405, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.2
NC_012982:711122:746813746813747382570Hirschia baltica ATCC 49814, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.8
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit8e-0753.1
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor9e-0753.1
NC_006322:567987:592712592712593209498Bacillus licheniformis ATCC 14580, complete genomeSigV1e-0652.4
NC_006270:568171:592922592922593419498Bacillus licheniformis ATCC 14580, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)1e-0652.4
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_014829:4422314:442603644260364426554519Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)2e-0652
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0651.6
NC_008391:2045348:206876820687682069472705Burkholderia cepacia AMMD chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily2e-0651.6
NC_011830:1190502:120506412050641205564501Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0651.6
NC_011898:426951:428407428407428976570Clostridium cellulolyticum H10, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.6
NC_014483:4740214:475311047531104753685576Paenibacillus polymyxa E681 chromosome, complete genomeDNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein6e-0650.4
NC_011830:3369282:338259733825973383103507Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1
NC_010552:58294:958139581396517705Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily7e-0650.1
NC_010723:1133163:113316311331631133726564Clostridium botulinum E3 str. Alaska E43, complete genomeRNA polymerase sigma-70 factor, family1e-0549.7
NC_016627:4323370:436892043689204369462543Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor1e-0549.7