Query: NC_003210:2749538 Listeria monocytogenes EGD-e, complete genome
Start: 2749538, End: 2772612, Length: 23075
Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria
General Information: This strain has numerous pathogenicity islands and genes as compared to the related non-pathogenic organism Listeria innocua. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor". There are 13 serovars associated with Listeria monocytogenes, and the serovar 4b strains are more commonly associated with invasive disease.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
---|
NC_006270:1415001 | 1415001 | 1458194 | 43194 | Bacillus licheniformis ATCC 14580, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_006322:1415863 | 1415863 | 1459056 | 43194 | Bacillus licheniformis ATCC 14580, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010498:4821519* | 4821519 | 4844970 | 23452 | Escherichia coli SMS-3-5, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
CP002185:794732 | 794732 | 818431 | 23700 | Escherichia coli W, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014915:1376035 | 1376035 | 1404514 | 28480 | Geobacillus sp. Y412MC52 chromosome, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_013411:2236166 | 2236166 | 2264570 | 28405 | Geobacillus sp. Y412MC61, complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_011146:3720658* | 3720658 | 3752668 | 32011 | Geobacter bemidjiensis Bem, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_003212:2837366 | 2837366 | 2860099 | 22734 | Listeria innocua Clip11262, complete genome | 0 | 7777 | BLASTN svg | BLASTP svg |
NC_002973:2701983 | 2701983 | 2724787 | 22805 | Listeria monocytogenes str. 4b F2365, complete genome | 0 | 10390 | BLASTN svg | BLASTP svg |
NC_013891:2643085 | 2643085 | 2666099 | 23015 | Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome | 0 | 4484 | BLASTN svg | BLASTP svg |
NC_010658:4494103* | 4494103 | 4512099 | 17997 | Shigella boydii CDC 3083-94, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007613:4217557* | 4217557 | 4256118 | 38562 | Shigella boydii Sb227, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015224:1514747 | 1514747 | 1540418 | 25672 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_010159:2955562 | 2955562 | 2978457 | 22896 | Yersinia pestis Angola, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_005810:1976000 | 1976000 | 1998607 | 22608 | Yersinia pestis biovar Microtus str. 91001, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_003143:1880000 | 1880000 | 1902325 | 22326 | Yersinia pestis CO92, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |