Pre_GI: BLASTN Hits

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Query: NC_003210:2749538 Listeria monocytogenes EGD-e, complete genome

Start: 2749538, End: 2772612, Length: 23075

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain has numerous pathogenicity islands and genes as compared to the related non-pathogenic organism Listeria innocua. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor". There are 13 serovars associated with Listeria monocytogenes, and the serovar 4b strains are more commonly associated with invasive disease.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002973:27019832701983272478722805Listeria monocytogenes str. 4b F2365, complete genome010390BLASTN svgBLASTP svg
NC_003212:28373662837366286009922734Listeria innocua Clip11262, complete genome07777BLASTN svgBLASTP svg
NC_013891:26430852643085266609923015Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome04484BLASTN svgBLASTP svg
NC_011146:3720658*3720658375266832011Geobacter bemidjiensis Bem, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_005810:19760001976000199860722608Yersinia pestis biovar Microtus str. 91001, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003143:18800001880000190232522326Yersinia pestis CO92, complete genome3e-1281.8BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015224:15147471514747154041825672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_014915:13760351376035140451428480Geobacillus sp. Y412MC52 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013411:22361662236166226457028405Geobacillus sp. Y412MC61, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006270:14150011415001145819443194Bacillus licheniformis ATCC 14580, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006322:14158631415863145905643194Bacillus licheniformis ATCC 14580, complete genome7e-0763.9BLASTN svgBLASTP svg