Pre_GI: BLASTN Hits

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Query: NC_003198:378844 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 378844, End: 402752, Length: 23909

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004631:2584244*2584244260559921356Salmonella enterica subsp. enterica serovar Typhi Ty2, complete026230BLASTN svgBLASTP svg
NC_006511:24677632467763249158023818Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC024750BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,024340BLASTN svgBLASTP svg
NC_010102:27213742721374274466823295Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,024260BLASTN svgBLASTP svg
NC_011149:36176536176538459922835Salmonella enterica subsp. enterica serovar Agona str. SL483,024260BLASTN svgBLASTP svg
NC_011080:38344138344140609922659Salmonella enterica subsp. enterica serovar Newport str. SL254,024140BLASTN svgBLASTP svg
NC_006905:40115440115443134930196Salmonella enterica subsp. enterica serovar Choleraesuis str014240BLASTN svgBLASTP svg
NC_003197:36743036743038660919180Salmonella typhimurium LT2, complete genome013890BLASTN svgBLASTP svg
NC_010067:24881412488141251937331233Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete011140BLASTN svgBLASTP svg
NC_006905:1961774*1961774198409922326Salmonella enterica subsp. enterica serovar Choleraesuis str0668BLASTN svgBLASTP svg
NC_014121:1848971*1848971187217723207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-55224BLASTN svgBLASTP svg
NC_009648:293052*29305232674733696Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-26129BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome5e-23117BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome2e-22115BLASTN svgBLASTP svg
NC_020064:29603322960332298749027159Serratia marcescens FGI94, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009648:19146211914621194059925979Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013508:63914639148559921686Edwardsiella tarda EIB202, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_020063:23438132343813236609922287Enterobacteriaceae bacterium strain FGI 57, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014562:14028631402863142199619134Pantoea vagans C9-1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013198:1030970*1030970105037019401Lactobacillus rhamnosus GG, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011992:12137261213726123279819073Acidovorax ebreus TPSY, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011770:28042182804218282883824621Pseudomonas aeruginosa LESB58, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008497:1575884*1575884159946023577Lactobacillus brevis ATCC 367, complete genome3e-0661.9BLASTN svgBLASTP svg