Pre_GI: BLASTN Hits

Some Help

Query: NC_003198:25807 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 25807, End: 48313, Length: 22507

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome4e-144519BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome4e-144519BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome4e-144519BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome9e-142511BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome2e-142513BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome6e-149535BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome1e-140507BLASTN svgBLASTP svg
CP002516:4081484*4081484410409522612Escherichia coli KO11, complete genome4e-144519BLASTN svgBLASTP svg
AP010958:12660*126603398921330Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-142511BLASTN svgBLASTP svg
NC_002655:12000*120003357021571Escherichia coli O157:H7 EDL933, complete genome3e-138500BLASTN svgBLASTP svg
NC_002695:12000*120003517323174Escherichia coli O157:H7 str. Sakai, complete genome3e-138500BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome1e-140507BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome4e-144519BLASTN svgBLASTP svg
NC_013850:4612812*4612812463649923688Klebsiella variicola At-22 chromosome, complete genome3e-80307BLASTN svgBLASTP svg
NC_010067:28814482881448290411422667Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete014640BLASTN svgBLASTP svg
NC_011149:25760257604831422555Salmonella enterica subsp. enterica serovar Agona str. SL483,025110BLASTN svgBLASTP svg
NC_011080:25751257514830822558Salmonella enterica subsp. enterica serovar Newport str. SL254,025250BLASTN svgBLASTP svg
NC_006511:25796257964828322488Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC026080BLASTN svgBLASTP svg
NC_010102:25893258934815522263Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,012960BLASTN svgBLASTP svg
NC_004631:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi Ty2, complete026360BLASTN svgBLASTP svg
NC_003197:25803258034831722515Salmonella typhimurium LT2, complete genome025360BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome9e-142511BLASTN svgBLASTP svg
NC_013526:43981343981347960839796Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010159:80966380966383240722745Yersinia pestis Angola, complete genome6e-35157BLASTN svgBLASTP svg
NC_008150:4561633*4561633458159919967Yersinia pestis Antiqua, complete genome6e-35157BLASTN svgBLASTP svg
NC_003143:483395*48339550335019956Yersinia pestis CO92, complete genome6e-35157BLASTN svgBLASTP svg
NC_008149:402599*40259942390621308Yersinia pestis Nepal516, complete genome6e-35157BLASTN svgBLASTP svg
NC_006155:713174*71317473201318840Yersinia pseudotuberculosis IP 32953, complete genome6e-35157BLASTN svgBLASTP svg