Pre_GI: BLASTN Hits

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Query: NC_003198:2297837 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 2297837, End: 2322279, Length: 24443

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006905:23552902355290237961224323Salmonella enterica subsp. enterica serovar Choleraesuis str026070BLASTN svgBLASTP svg
NC_011080:23426722342672236709924428Salmonella enterica subsp. enterica serovar Newport str. SL254,025980BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,025950BLASTN svgBLASTP svg
NC_011149:22945002294500231681122312Salmonella enterica subsp. enterica serovar Agona str. SL483,025820BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome023890BLASTN svgBLASTP svg
NC_004631:685357*68535771085325497Salmonella enterica subsp. enterica serovar Typhi Ty2, complete021600BLASTN svgBLASTP svg
NC_006511:682863*68286370873225870Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC020670BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,020340BLASTN svgBLASTP svg
NC_010067:63268363268365799725315Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete08546BLASTN svgBLASTP svg
NC_004631:38096783809678383452924852Salmonella enterica subsp. enterica serovar Typhi Ty2, complete08031BLASTN svgBLASTP svg
NC_003198:38241873824187384903924853Salmonella enterica subsp. enterica serovar Typhi str. CT18,08031BLASTN svgBLASTP svg
NC_003197:40058574005857402918723331Salmonella typhimurium LT2, complete genome07713BLASTN svgBLASTP svg
NC_011083:40200004020000404339423395Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,07713BLASTN svgBLASTP svg
NC_011080:39764413976441399977023330Salmonella enterica subsp. enterica serovar Newport str. SL254,07563BLASTN svgBLASTP svg
NC_010102:39554793955479397940323925Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,06433BLASTN svgBLASTP svg
NC_006511:37940173794017381725023234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC06421BLASTN svgBLASTP svg
NC_011149:39303583930358395376323406Salmonella enterica subsp. enterica serovar Agona str. SL483,06385BLASTN svgBLASTP svg
NC_006905:39427533942753396819425442Salmonella enterica subsp. enterica serovar Choleraesuis str06191BLASTN svgBLASTP svg
NC_010067:37539713753971377672522755Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete04492BLASTN svgBLASTP svg
NC_011149:1236689*1236689125609919411Salmonella enterica subsp. enterica serovar Agona str. SL483,01542BLASTN svgBLASTP svg
NC_010067:191190*19119023335342164Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01275BLASTN svgBLASTP svg
NC_010067:892729*89272992523832510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01124BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str0876BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete0737BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,5e-156559BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome5e-156559BLASTN svgBLASTP svg
NC_013421:29722692972269300638334115Pectobacterium wasabiae WPP163, complete genome7e-155555BLASTN svgBLASTP svg
NC_009648:22527572252757228316130405Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-134488BLASTN svgBLASTP svg
NC_010634:31557413155741318046024720Yersinia pseudotuberculosis PB1/+, complete genome5e-85323BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-81311BLASTN svgBLASTP svg
NC_006155:32379903237990326294924960Yersinia pseudotuberculosis IP 32953, complete genome3e-80307BLASTN svgBLASTP svg
NC_013508:2587913*2587913262259934687Edwardsiella tarda EIB202, complete genome7e-75289BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome1e-57232BLASTN svgBLASTP svg
NC_014837:31265433126543315305826516Pantoea sp. At-9b chromosome, complete genome1e-57232BLASTN svgBLASTP svg
NC_010694:12508411250841127452923689Erwinia tasmaniensis, complete genome1e-54222BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome1e-51212BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome3e-49204BLASTN svgBLASTP svg
NC_008321:21900002190000221007020071Shewanella sp. MR-4, complete genome1e-42182BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome1e-33153BLASTN svgBLASTP svg
NC_007298:3764048*3764048379032226275Dechloromonas aromatica RCB, complete genome6e-32147BLASTN svgBLASTP svg
NC_011149:31870223187022321200624985Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-28135BLASTN svgBLASTP svg
NC_015224:32917363291736331359921864Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,6e-26127BLASTN svgBLASTP svg
NC_004631:3112043*3112043313711225070Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-26127BLASTN svgBLASTP svg
NC_003198:3126548*3126548315161725070Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-26127BLASTN svgBLASTP svg
NC_006511:3079512*3079512310454825037Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-23119BLASTN svgBLASTP svg
NC_013961:2370994*2370994240176230769Erwinia amylovora, complete genome8e-19103BLASTN svgBLASTP svg
NC_015458:19388601938860196301624157Pusillimonas sp. T7-7 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008344:49039*4903913459985561Nitrosomonas eutropha C91, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010170:39442283944228399478350556Bordetella petrii, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009092:179226*17922620808728862Shewanella loihica PV-4, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015222:14925001492500151210019601Nitrosomonas sp. AL212 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010002:4175809*4175809419921123403Delftia acidovorans SPH-1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014973:54449544497854124093Geobacter sp. M18 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015563:3401867*3401867342947527609Delftia sp. Cs1-4 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015572:25419682541968256409922132Methylomonas methanica MC09 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013854:3200912*3200912322443023519Azospirillum sp. B510, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007645:34347953434795345695122157Hahella chejuensis KCTC 2396, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005126:44239644423964444767223709Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_020064:1611820*1611820163518523366Serratia marcescens FGI94, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_009792:26887472688747271473325987Citrobacter koseri ATCC BAA-895, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0763.9BLASTN svgBLASTP svg
NC_005126:15490661549066157724728182Photorhabdus luminescens subsp. laumondii TTO1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014623:44264164426416444997023555Stigmatella aurantiaca DW4/3-1 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015387:1803938*1803938184009936162Marinithermus hydrothermalis DSM 14884 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015731:13817371381737140468922953Nitrosomonas sp. Is79A3 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020064:37904723790472381935828887Serratia marcescens FGI94, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015497:12878771287877133880050924Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0661.9BLASTN svgBLASTP svg