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Query: NC_003198:1378457 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 1378457, End: 1399126, Length: 20670

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004631:15870001587000160727820279Salmonella enterica subsp. enterica serovar Typhi Ty2, complete017830BLASTN svgBLASTP svg
NC_011080:17096121709612173614226531Salmonella enterica subsp. enterica serovar Newport str. SL254,012360BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,012320BLASTN svgBLASTP svg
NC_010102:13883441388344141572327380Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,012310BLASTN svgBLASTP svg
NC_006905:17264161726416175294526530Salmonella enterica subsp. enterica serovar Choleraesuis str012270BLASTN svgBLASTP svg
NC_003197:17132591713259173659923341Salmonella typhimurium LT2, complete genome012210BLASTN svgBLASTP svg
NC_011083:17613521761352178789226541Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,012140BLASTN svgBLASTP svg
NC_010067:1300606*1300606132180421199Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete09305BLASTN svgBLASTP svg
NC_013961:18910001891000191309922100Erwinia amylovora, complete genome1e-125458BLASTN svgBLASTP svg
NC_012880:36453043645304366681221509Dickeya dadantii Ech703, complete genome6e-78299BLASTN svgBLASTP svg
NC_013508:18628961862896188607023175Edwardsiella tarda EIB202, complete genome2e-77297BLASTN svgBLASTP svg
NC_009053:393700*39370041964225943Actinobacillus pleuropneumoniae L20, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007492:11936261193626121699723372Pseudomonas fluorescens PfO-1, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010939:405477*40547744742441948Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete4e-0867.9BLASTN svgBLASTP svg
NC_013194:76116676116678409922934Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete2e-0765.9BLASTN svgBLASTP svg
NC_014752:2087998*2087998211535127354Neisseria lactamica ST-640, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008767:20101402010140202919319054Neisseria meningitidis FAM18, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020181:10574761057476107717519700Enterobacter aerogenes EA1509E, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015663:43471874347187437073923553Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg