Pre_GI: BLASTP Hits

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Query: NC_003198:4453457:4505609 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 4505609, End: 4506241, Length: 633

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:2896254:289974528997452900377633Salmonella enterica subsp. enterica serovar Typhimurium strphage repressor protein cI3e-110397
NC_011147:2676972:268936826893682690000633Salmonella enterica subsp. enterica serovar Paratyphi A strphage repressor protein cI3e-110397
NC_003197:2870268:287617928761792876811633Salmonella typhimurium LT2, complete genomehypothetical protein3e-110397
NC_006511:2677964:269383226938322694464633Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCphage repressor protein cI3e-110397
NC_011742:2823000:282933728293372829969633Escherichia coli S88 chromosome, complete genomephage regulatory protein cI4e-67254
NC_016857:2871689:288686328868632887495633Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage repressor protein cI1e-63242
NC_013282:3389619:340505834050583405672615Cronobacter turicensis, complete genomePutative uncharacterized protein ORFI in retron EC672e-63242
NC_011205:2938356:295459429545942954998405Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage repressor protein cI9e-62236
NC_016810:2871689:288692028869202887495576Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage repressor protein cI7e-57219
NC_020260:312805:318993318993319607615Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-34146
NC_014837:3766426:378197237819723782577606Pantoea sp. At-9b chromosome, complete genomeCI repressor5e-34144
NC_007613:761234:763483763483764052570Shigella boydii Sb227, complete genomerepressor protein9e-34143
NC_009436:1466580:147758714775871478183597Enterobacter sp. 638, complete genomebacteriophage CI repressor1e-33142
NC_012947:2898179:290790729079072908476570Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeCI repressor3e-33141
NC_013592:804288:821538821538822101564Dickeya dadantii Ech586, complete genomeCI repressor9e-32136
NC_011601:846358:856102856102856671570Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein2e-30132
NC_020181:5182568:519547351954735196063591Enterobacter aerogenes EA1509E, complete genomeCI2e-30132
NC_014500:894136:9188619188619200541194Dickeya dadantii 3937 chromosome, complete genomeRepressor protein CI2e-30132
NC_014306:1244721:124907312490731249669597Erwinia billingiae Eb661, complete genomeBacteriophage CI repressor5e-30130
NC_011601:846358:855128855128856051924Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein1e-29129
NC_015061:2770856:277962827796282780188561Rahnella sp. Y9602 chromosome, complete genomeCI repressor2e-28125
NC_016845:4046142:405102140510214051617597Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,CI repressor2e-26119
NC_014837:2458780:246975224697522470630879Pantoea sp. At-9b chromosome, complete genomeCI repressor4e-22104
NC_012917:3565268:357597535759753576832858Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeCI repressor2e-21102
NC_009648:3803622:383337538333753833950576Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage repressor protein CI2e-21102
NC_015061:596247:611561611561612151591Rahnella sp. Y9602 chromosome, complete genomeCI repressor6e-21100
NC_009436:3807420:381287738128773813464588Enterobacter sp. 638, complete genomebacteriophage CI repressor3e-2098.2
NC_006155:2116834:212296221229622123573612Yersinia pseudotuberculosis IP 32953, complete genomeCI repressor of phage 186 and others1e-1996.3
NC_010694:614985:629291629291629869579Erwinia tasmaniensis, complete genomeBacteriophage 186 repressor protein CI4e-1891.3
NC_020211:4598217:461422846142284614686459Serratia marcescens WW4, complete genomephage transcriptional regulator7e-1684
NC_009784:253852:266342266342266968627Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein1e-1376.3
NC_012912:1701231:174072917407291741118390Dickeya zeae Ech1591, complete genome3e-1272