Pre_GI: BLASTP Hits

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Query: NC_003198:4453457:4504500 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 4504500, End: 4504700, Length: 201

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-33139
NC_011147:2676972:268825926882592688459201Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-31133
NC_006511:2677964:269272326927232692923201Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-31133
NC_020260:312805:320497320497320697201Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-27120
NC_011601:846358:857568857568857768201Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein6e-27119
NC_009436:1466580:147905014790501479250201Enterobacter sp. 638, complete genomehypothetical protein1e-25114
NC_010694:614985:630810630810631010201Erwinia tasmaniensis, complete genomehypothetical protein2e-23107
NC_011742:2823000:282812728281272828453327Escherichia coli S88 chromosome, complete genomehypothetical protein1e-21102
NC_016810:2871689:288531228853122885608297Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein1e-21101
NC_009436:3807420:381175038117503811950201Enterobacter sp. 638, complete genomehypothetical protein9e-2198.6
NC_017046:2869873:288405428840542884200147Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein3e-1477
NC_013282:3389619:340394834039483404139192Cronobacter turicensis, complete genomeProtein fil1e-1375.5
NC_016860:2896254:289860328986032898836234Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1271.2
NC_003197:2870268:287503728750372875270234Salmonella typhimurium LT2, complete genomehypothetical protein2e-1271.2
NC_013956:3525711:354209535420953542274180Pantoea ananatis LMG 20103 chromosome, complete genomeFil5e-1063.2
NC_016845:4046142:405284940528494052995147Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein3e-0960.5
NC_014837:3766426:378094637809463781098153Pantoea sp. At-9b chromosome, complete genome2e-0857.8
NC_014837:2458780:247166124716612471810150Pantoea sp. At-9b chromosome, complete genome1e-0652