Pre_GI: BLASTP Hits

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Query: NC_003198:4453457:4470678 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 4470678, End: 4471577, Length: 900

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4536383:455363945536394554538900Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-168592
NC_016832:4425330:444255144425514443450900Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-168590
NC_004547:639726:658154658154659074921Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-58224
NC_012962:3864000:386955038695503870461912Photorhabdus asymbiotica, complete genomehypothetical protein9e-58223
NC_013421:701005:735368735368736294927Pectobacterium wasabiae WPP163, complete genomehypothetical protein3e-55215
NC_003198:4453457:446969644696964470604909Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-40165
NC_012125:4536383:455265745526574553565909Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-40165
NC_016832:4425330:444156944415694442477909Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-40165
NC_013421:701005:734396734396735289894Pectobacterium wasabiae WPP163, complete genomehypothetical protein1e-38160
NC_004547:639726:657186657186658079894Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein1e-38160