Pre_GI: BLASTP Hits

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Query: NC_003198:3126548:3139940 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3139940, End: 3140623, Length: 684

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:3100683:311407531140753114758684Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Monoamine regulon transcriptional regulator1e-131469
NC_004631:3112043:312543531254353126118684Salmonella enterica subsp. enterica serovar Typhi Ty2, completeLysR-family transcriptional regulator1e-131469
NC_011147:3075186:308858930885893089272684Salmonella enterica subsp. enterica serovar Paratyphi A strLysR family transcriptional regulator9e-129459
NC_006511:3079512:309291530929153093598684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCLysR-family transcriptional regulator9e-129459
NC_011149:3187022:320031032003103201056747Salmonella enterica subsp. enterica serovar Agona str. SL483,LysR-family transcriptional regulator6e-126449
NC_015275:521436:523652523652524410759Clostridium lentocellum DSM 5427 chromosome, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family4e-1064.7
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein5e-1064.7
NC_010994:57362:752167521675998783Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, LuxR family2e-0962.4
NC_017033:2758582:2759804275980427625362733Frateuria aurantia DSM 6220 chromosome, complete genomeATP-dependent transcriptional regulator3e-0962.4
NC_007761:57199:709957099571777783Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, LuxR family3e-0962
NC_004337:3621985:364145236414523642054603Shigella flexneri 2a str. 301, complete genomeputative regulator1e-0756.6
NC_004337:3590323:364145236414523642054603Shigella flexneri 2a str. 301, complete genomeputative regulator1e-0756.6
NC_017328:3655876:367630936763093676911603Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yhjB1e-0756.6
NC_007908:4677856:4680475468047546831592685Rhodoferax ferrireducens T118, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family1e-0756.6
NC_018750:1591895:160845116084511609095645Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system response regulator1e-0756.6
NC_011083:1216500:123407712340771234727651Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator CsgD2e-0755.8
NC_011080:1209935:123151512315151232165651Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator CsgD2e-0755.8
NC_011147:1763681:176368117636811764331651Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional regulator CsgD2e-0755.8
NC_012731:1088321:1093493109349310962582766Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometrans-acting regulatory protein of aco operon2e-0756.2
NC_011420:3822765:3835639383563938383622724Rhodospirillum centenum SW, complete genometranscriptional regulator, LuxR family protein2e-0756.2
NC_000913:1087062:110176911017691102419651Escherichia coli K12, complete genomeDNA-binding transcriptional activator in two-component regulatory system3e-0755.5
NC_003198:1117687:114002711400271140653627Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein3e-0755.5
NC_016831:947281:992760992760993410651Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcsg operon transcriptional regulator protein3e-0755.5
NC_017046:1164176:118594111859411186513573Salmonella enterica subsp. enterica serovar Typhimurium str. 798csg operon transcriptional regulator protein3e-0755.5
NC_011283:4438500:4484630448463044873952766Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AcoK3e-0755.5
NC_009620:1307932:131969113196911320470780Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequencetwo component LuxR family transcriptional regulator3e-0755.5
NC_006905:1186895:120981312098131210463651Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator (LuxR/UhpA family)3e-0755.5
AC_000091:1083798:110278711027871103437651Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator in two-component regulatory system3e-0755.5
NC_003197:1207597:122972812297281230378651Salmonella typhimurium LT2, complete genomeputative transcriptional regulator3e-0755.5
NC_011094:1166271:118803511880351188685651Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding transcriptional regulator CsgD3e-0755.5
NC_016860:1205282:122741412274141228064651Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding transcriptional regulator CsgD3e-0755.5
NC_016863:1165232:118718111871811187831651Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA-binding transcriptional regulator CsgD3e-0755.5
NC_008258:1076922:109674910967491097399651Shigella flexneri 5 str. 8401, complete genomeProbable csgAB operon transcriptional Regulatory protein3e-0755.5
NC_004337:1065609:107870710787071079357651Shigella flexneri 2a str. 301, complete genomeprobable csgAB operon transcriptional regulatory protein3e-0755.5
NC_015675:3046852:306292830629283063701774Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator4e-0754.7
NC_018000:2816637:282633228263322826970639Sinorhizobium fredii USDA 257 chromosome, complete genomenitrate/nitrite response regulator protein NarP4e-0755.1
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator4e-0755.1
NC_009465:938378:950758950758951387630Candidatus Vesicomyosocius okutanii HA, complete genometwo-component system, nitrate/nitrite response regulator5e-0754.7
NC_015968:1709680:171782617178261718476651Enterobacter asburiae LF7a chromosome, complete genomeLuxR family transcriptional regulator5e-0754.7
NC_006905:3717306:373803137380313738588558Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator (LuxR/UhpA familiy)5e-0754.7
NC_016514:1701273:170763317076331708367735Enterobacter cloacae EcWSU1 chromosome, complete genomeCsgBAC operon transcriptional regulatory protein5e-0754.7
NC_013716:1178383:119993311999331200583651Citrobacter rodentium ICC168, complete genomeprobable CsgAB operon transcriptional regulator6e-0754.3
NC_014209:1487699:150389515038951504512618Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,two component transcriptional regulator, LuxR family6e-0754.3
NC_018012:1326553:1357935135793513590951161Thiocystis violascens DSM 198 chromosome, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain6e-0754.3
NC_014121:2629075:264193326419332642583651Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completesgAB operon transcriptional regulatory protein6e-0754.7
NC_015379:3175500:318305931830593183796738Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative response regulator, NarL family8e-0753.9
NC_014363:114239:142838142838143575738Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, LuxR family9e-0753.9
NC_007498:1148249:114972211497221150393672Pelobacter carbinolicus DSM 2380, complete genometwo component signal transduction response regulator1e-0653.1
NC_013282:551219:556487556487557143657Cronobacter turicensis, complete genomePutative HTH-type transcriptional regulator yhjB1e-0653.1
NC_016830:3697173:370346837034683703962495Pseudomonas fluorescens F113 chromosome, complete genomeLuxR family transcriptional regulator1e-0653.1
NC_008027:3844355:386009638600963860908813Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family1e-0653.5
NC_007795:1922000:197296219729621973591630Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeDNA-binding response regulator VraR, putative1e-0653.5
NC_008610:1068429:108364410836441084273630Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),two component transcriptional regulator, LuxR family1e-0653.5
NC_012997:4114526:413849341384934139266774Teredinibacter turnerae T7901, complete genometwo-component regulator1e-0653.5
NC_010571:2041277:206728820672882067950663Opitutus terrae PB90-1, complete genometwo component transcriptional regulator, LuxR family2e-0652.4
NC_008321:2649781:265542726554272656092666Shewanella sp. MR-4, complete genometwo component transcriptional regulator, LuxR family2e-0652.8
NC_008322:2716676:272338927233892724054666Shewanella sp. MR-7, complete genometwo component transcriptional regulator, LuxR family2e-0652.8
NC_002947:4362271:437030543703054371102798Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family2e-0652.8
NC_007204:696972:717103717103717762660Psychrobacter arcticus 273-4, complete genomenitrate/nitrite response regulator, possibly NarL2e-0653.1
NC_007951:2904644:290556829055682906209642Burkholderia xenovorans LB400 chromosome 1, complete sequenceTwo Component Transcriptional regulator, LuxR family3e-0652
NC_019673:3582004:359677535967753597140366Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-0652
NC_011958:1121387:112279311227931123554762Rhodobacter sphaeroides KD131 chromosome 2, complete genomeTwo component transcriptional regulator, LuxR family3e-0652
NC_007777:4796627:481423348142334815060828Frankia sp. CcI3, complete genometranscriptional regulator, LuxR family3e-0652.4
NC_009050:811358:812764812764813525762Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family3e-0652.4
NC_008027:3844355:386445738644573865245789Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family4e-0651.6
NC_013501:1140390:115172711517271152362636Rhodothermus marinus DSM 4252, complete genometwo component transcriptional regulator, LuxR family4e-0651.6
NC_020995:2255521:225627422562742256903630Enterococcus casseliflavus EC20, complete genomeLuxR family DNA-binding response regulator4e-0651.6
NC_005125:4283345:429527242952724295949678Gloeobacter violaceus PCC 7421, complete genometwo-component response regulator4e-0651.6
NC_008260:2442000:246057324605732461223651Alcanivorax borkumensis SK2, complete genometranscriptional regulatory protein degu (protease production enhancer protein).5e-0651.2
NC_016584:1436710:1444035144403514466622628Desulfosporosinus orientis DSM 765 chromosome, complete genomeATP-dependent transcriptional regulator5e-0651.2
NC_010718:2460893:247049824704982471184687Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LuxR family5e-0651.2
NC_011894:6888562:691263169126316913443813Methylobacterium nodulans ORS 2060, complete genometwo component transcriptional regulator, LuxR family5e-0651.2
NC_003078:671000:717545717545718369825Sinorhizobium meliloti 1021 plasmid pSymB, complete sequenceputative response regulator protein5e-0651.2
NC_013093:2633000:266768826676882668353666Actinosynnema mirum DSM 43827, complete genometwo component transcriptional regulator, LuxR family5e-0651.6
NC_015152:2831566:285606528560652857009945Spirochaeta sp. Buddy chromosome, complete genomeLuxR family transcriptional regulator5e-0651.6
NC_008278:1876435:187968118796811880322642Frankia alni ACN14a, complete genomePutative two-component system response regulator6e-0651.2
NC_010572:188500:209287209287209964678Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system response regulator6e-0651.2
NC_019757:3869047:388598738859873886706720Cylindrospermum stagnale PCC 7417, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain8e-0650.8
NC_014310:1413210:143999714399971440524528Ralstonia solanacearum PSI07 megaplasmid, complete sequenceLuxR family transcriptional regulator8e-0650.8
NC_009434:3413461:3415410341541034180282619Pseudomonas stutzeri A1501, complete genometranscriptional regulator8e-0650.8
NC_008314:1465643:1487752148775214905262775Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, LuxR-family8e-0650.8
NC_016887:2269177:229490122949012295518618Nocardia cyriacigeorgica GUH-2, complete genomeresponse regulator, two-component system1e-0550.4