Pre_GI: BLASTP Hits

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Query: NC_003198:3042000:3042943 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3042943, End: 3043455, Length: 513

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014618:4114004:414414141441414144617477Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CaiF1e-32138
NC_013361:5319497:533979453397945340207414Escherichia coli O26:H11 str. 11368 chromosome, complete genomepositive regulator GrlA1e-1789
NC_015761:299386:346468346468346950483Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-1788.6
NC_002695:4584177:461376746137674614180414Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-1788.2
NC_002655:4653160:468275046827504683163414Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-1788.2
NC_013008:4643825:467291246729124673325414Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded positive regulator of transcription2e-1788.2
NC_013941:4470932:450127145012714501684414Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-1788.2
AP010958:3669500:370367337036733704086414Escherichia coli O103:H2 str. 12009 DNA, complete genomepositive regulator GrlA2e-1788.2
NC_013353:3669500:370367337036733704086414Escherichia coli O103:H2 str. 12009, complete genomepositive regulator GrlA2e-1788.2
NC_013364:3701895:374517337451733745586414Escherichia coli O111:H- str. 11128, complete genomepositive regulator GrlA3e-1787.8
NC_011601:4096427:412753241275324127945414Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomepositive regulator GrlA3e-1787.8
NC_020211:689451:700913700913701386474Serratia marcescens WW4, complete genomehypothetical protein1e-0858.9
NC_016861:22256:229732297323482510Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein8e-0753.1
NC_003277:22257:229742297423483510Salmonella typhimurium LT2 plasmid pSLT, complete sequencehypothetical protein8e-0753.1
NC_012779:2856051:285749128574912857928438Edwardsiella ictaluri 93-146, complete genometranscriptional activatory protein CaiF1e-0652.8