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Query: NC_003197:1611302 Salmonella typhimurium LT2, complete genome

Start: 1611302, End: 1633137, Length: 21836

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003198:14632531463253148503221780Salmonella enterica subsp. enterica serovar Typhi str. CT18,021810BLASTN svgBLASTP svg
NC_011149:15784511578451159811519665Salmonella enterica subsp. enterica serovar Agona str. SL483,018190BLASTN svgBLASTP svg
NC_010067:14140001414000143680422805Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete05650BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome0698BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome3e-55224BLASTN svgBLASTP svg
NC_008687:25669225669228607929388Paracoccus denitrificans PD1222 chromosome 2, complete sequence2e-34155BLASTN svgBLASTP svg
NC_009720:2424975*2424975244520720233Xanthobacter autotrophicus Py2, complete genome5e-23117BLASTN svgBLASTP svg
NC_010067:11161481116148113933023183Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-20109BLASTN svgBLASTP svg
NC_007973:14117141411714144204530332Ralstonia metallidurans CH34 chromosome 1, complete sequence5e-20107BLASTN svgBLASTP svg
NC_013851:26108472610847263605825212Allochromatium vinosum DSM 180 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
NC_009648:18825001882500190677624277Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-1695.6BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013851:2317091*2317091233893321843Allochromatium vinosum DSM 180 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015224:24735822473582249262519044Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,6e-0763.9BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome3e-0661.9BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome3e-0661.9BLASTN svgBLASTP svg