Pre_GI: BLASTP Hits

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Query: NC_003197:920000:941972 Salmonella typhimurium LT2, complete genome

Start: 941972, End: 942592, Length: 621

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018524:2423016:242682924268292427452624Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, tetR family protein1e-0756.2
NC_011601:846358:851805851805852341537Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional regulator3e-80297
NC_013159:3423500:343925934392593439828570Saccharomonospora viridis DSM 43017, complete genomehypothetical protein9e-1683.6
NC_006905:946418:969719969719970339621Salmonella enterica subsp. enterica serovar Choleraesuis strparal putative regulator (TetR/Acr family)8e-120429
NC_016612:3361802:336831233683123368854543Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative DEOR-type transcriptional regulator2e-67255
NC_016845:1773416:177770417777041778267564Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative DEOR-type transcriptional regulator9e-66249
NC_016856:921057:943024943024943644621Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein2e-121434
NC_016860:959609:981576981576982196621Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein2e-121434
NC_016863:920346:942313942313942933621Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative regulatory protein2e-121434
NC_016857:919266:941221941221941853633Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative regulatory protein2e-121434
NC_016810:919266:941233941233941853621Salmonella enterica subsp. enterica serovar Typhimurium strputative tetR family transcriptional regulator2e-121434
NC_009831:2045811:206559820655982066263666Shewanella sediminis HAW-EB3, complete genomeputative transcriptional regulator, TetR family5e-0754.7
NC_014666:1805806:181187318118731812475603Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR4e-0754.7
NC_012125:894955:916908916908917570663Salmonella enterica subsp. enterica serovar Paratyphi C strainTetR family transcriptional regulator3e-114410
NC_011274:896802:918762918762919382621Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tetR family transcriptional regulator8e-120429
NC_009436:1466580:147147214714721472020549Enterobacter sp. 638, complete genomeTetR family transcriptional regulator4e-69260
NC_015312:2278566:231704523170452317632588Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeTetR family transcriptional regulator2e-1789.4
NC_011294:878896:900864900864901484621Salmonella enterica subsp. enterica serovar Enteritidis strtetR family transcriptional regulator8e-120429
NC_011205:944125:966108966108966728621Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853TetR family transcriptional regulator3e-119427
NC_012947:2898179:291050729105072911043537Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeTetR family transcriptional regulator3e-80297
NC_015635:932240:933040933040933612573Microlunatus phosphovorus NM-1, complete genomeTetR family transcriptional regulator3e-30131
NC_015963:4500:233202332023877558Enterobacter asburiae LF7a plasmid pENTAS01, complete sequenceTetR family transcriptional regulator2e-1065.5
NC_017046:919249:941203941203941835633Salmonella enterica subsp. enterica serovar Typhimurium str. 798tetR-family transcriptional regulator2e-121434
NC_021177:3997727:400179040017904002380591Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator, TetR family5e-0754.7
NC_011080:924326:946306946306946926621Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, TetR family2e-118424
NC_011094:973140:995102995102995722621Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, TetR family protein8e-120429