Pre_GI: BLASTP Hits

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Query: NC_003197:606048:613593 Salmonella typhimurium LT2, complete genome

Start: 613593, End: 613781, Length: 189

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2495441:250422325042232504492270Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-31132
NC_016863:606742:614287614287614475189Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1integrase2e-30130
NC_016857:604792:613081613081613269189Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74integrase2e-30130
NC_016856:606742:614287614287614475189Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase2e-30130
NC_004631:2366335:237536623753662375551186Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-29127
NC_003198:598000:605550605550605735186Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-29127
NC_011147:2247460:225600322560032256158156Salmonella enterica subsp. enterica serovar Paratyphi A str4e-23106
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase2e-1477.4
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase7e-1475.9
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase7e-1475.9
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase7e-1475.9
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase7e-1475.9
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase4e-1373.2
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage4e-1373.2
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase5e-1373.2
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase5e-1373.2
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase8e-1372.4
NC_011750:527470:532595532595532762168Escherichia coli IAI39 chromosome, complete genome9e-1372
NC_006905:368942:3728473728473740101164Salmonella enterica subsp. enterica serovar Choleraesuis strInt2e-1168.2
NC_016860:364981:3688873688873700501164Salmonella enterica subsp. enterica serovar Typhimurium strintegrase2e-1168.2
NC_011083:374000:3768503768503780131164Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family2e-1168.2
NC_020260:2725201:274183327418332741964132Cronobacter sakazakii Sp291, complete genomeProphage DLP12 integrase2e-1064.3
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase6e-1062.8
NC_014562:469154:475073475073475705633Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD3e-0960.5
NC_014306:1286248:129230312923031293148846Erwinia billingiae Eb661, complete genomesimilar to prophage integrase9e-0958.9
NC_020418:2084937:2084937208493720860881152Morganella morganii subsp. morganii KT, complete genomePhage integrase1e-0858.5
NC_004337:309833:3269163269163280791164Shigella flexneri 2a str. 301, complete genomeputative phage integrase3e-0857.4
NC_004741:310382:3260603260603272231164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase3e-0857.4
NC_004741:310382:3138433138433150061164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase4e-0857
NC_017328:335160:347776347776348240465Shigella flexneri 2002017 chromosome, complete genomeputative phage integrase6e-0856.2
NC_004337:309833:311291311291311755465Shigella flexneri 2a str. 301, complete genomeputative phage integrase6e-0856.2
NC_011283:4212000:4229167422916742303301164Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase4e-0753.5
NC_016845:1285435:1288374128837412895371164Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,site-specific recombinase, phage integrase family4e-0753.5
NC_020418:3133831:3146831314683131479941164Morganella morganii subsp. morganii KT, complete genomeintegrase5e-0753.1
NC_015566:1206500:121002012100201210430411Serratia sp. AS12 chromosome, complete genome9e-0752.4
NC_015567:1206727:121020512102051210615411Serratia sp. AS9 chromosome, complete genome9e-0752.4
NC_012751:1538500:1538746153874615398911146Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeAPSE-2 prophage; integrase5e-0649.7