Pre_GI: BLASTP Hits

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Query: NC_003197:4005857:4006736 Salmonella typhimurium LT2, complete genome

Start: 4006736, End: 4007083, Length: 348

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:4025998:402687740268774027224348Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-38156
NC_006905:3942753:394639139463913946738348Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-38156
NC_011080:3976441:397732039773203977667348Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane protein YidH3e-38156
NC_011149:3930358:393123739312373931584348Salmonella enterica subsp. enterica serovar Agona str. SL483,inner membrane protein YidH3e-38156
NC_011094:3887648:388852738885273888874348Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-38156
NC_011205:4038884:403976340397634040110348Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-38156
NC_011274:3799696:381714838171483817495348Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-38156
NC_011294:3880500:388139338813933881740348Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-38156
NC_016810:4027170:402804940280494028396348Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-38156
NC_016831:3779611:379797937979793798326348Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-38156
NC_016856:4019549:402042840204284020775348Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein3e-38156
NC_016857:4025767:402805040280504028397348Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein3e-38156
NC_016860:4110968:411184741118474112194348Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein YidH3e-38156
NC_016863:3967156:396803539680353968382348Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein3e-38156
NC_011083:4020000:402094540209454021292348Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YidH1e-37154
NC_006511:3794017:379489637948963795243348Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane protein1e-37154
NC_011147:3789696:379057537905753790922348Salmonella enterica subsp. enterica serovar Paratyphi A strinner membrane protein1e-37154
NC_003198:3824187:384164538416453841992348Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-36151
NC_004337:3590323:389642338964233896770348Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-36151
NC_012522:2031786:203435520343552034720366Rhodococcus opacus B4, complete genomehypothetical membrane protein6e-1166.2
NC_008268:2313583:231563023156302315995366Rhodococcus sp. RHA1, complete genomepossible inner membrane protein8e-1165.9
NC_013446:2164974:218808921880892188445357Comamonas testosteroni CNB-2, complete genomehypothetical protein8e-1062.4
NC_016832:3798475:381607938160793816279201Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yidH1e-0858.5
NC_014165:2533040:255997925599792560314336Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein1e-0858.2