Pre_GI: BLASTP Hits

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Query: NC_003197:2894344:2929595 Salmonella typhimurium LT2, complete genome

Start: 2929595, End: 2930491, Length: 897

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:2943929:295091129509112951807897Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator4e-178624
NC_016863:2844883:289808328980832898979897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional activator4e-178624
NC_016860:2917910:295316129531612954057897Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional activator4e-178624
NC_016857:2943912:295217129521712953067897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional activator4e-178624
NC_016856:2896630:294983029498302950726897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional activator4e-178624
NC_016810:2943912:295217129521712953067897Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-178624
NC_003198:2769449:278265827826582783554897Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator4e-177620
NC_004631:2755306:276851527685152769411897Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator4e-177620
NC_016832:2743801:275581427558142756710897Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-177620
NC_011149:2829811:283805728380572838953897Salmonella enterica subsp. enterica serovar Agona str. SL483,Mig-143e-177620
NC_010102:2881714:289373728937372894633897Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-176619
NC_011080:2897977:290623529062352907131897Salmonella enterica subsp. enterica serovar Newport str. SL254,Mig-141e-176619
NC_012125:2826624:286481128648112865707897Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator4e-176617
NC_011205:2962270:297428929742892975185897Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Mig-141e-175615
NC_011274:2793355:280537528053752806271897Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator1e-175615
NC_011294:2802502:281452228145222815418897Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator1e-175615
NC_016831:2779864:279188527918852792781897Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator1e-175615
NC_011083:2847318:290410629041062905002897Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Mig-141e-174612
NC_011094:2791719:283672228367222837618897Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-174611
NC_006905:2857699:288437828843782885175798Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcription activator3e-156550
NC_010067:171053:178098178098178994897Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-149526
NC_010067:1829041:184092518409251841842918Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-123442
NC_011747:115864:132394132394133302909Escherichia coli S88 plasmid pECOS88, complete sequenceconserved hypothetical protein; putative Mig-14 protein8e-106383
NC_010488:48868:717637176372671909Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceMig-14 family protein7e-106383
NC_009837:155284:161865161865162773909Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein7e-106383
NC_014618:2788533:279162527916252792515891Enterobacter cloacae SCF1 chromosome, complete genomeMig-14 family protein1e-45183
NC_013283:113660:764176418504864Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein2e-45183
NC_010694:1052722:107042910704291071346918Erwinia tasmaniensis, complete genomePredicted Mig-14 family protein7e-37154
NC_009434:4140362:414177941417794142675897Pseudomonas stutzeri A1501, complete genomehypothetical protein1e-24113
NC_009439:637193:654334654334655230897Pseudomonas mendocina ymp, complete genomeMig-14 family protein6e-21101
NC_015410:709947:722476722476723372897Pseudomonas mendocina NK-01 chromosome, complete genomeMig-14 family protein7e-21101
NC_015556:4543380:454817745481774549073897Pseudomonas fulva 12-X chromosome, complete genomeMig-14 family protein1e-1997.1