Pre_GI: BLASTP Hits

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Query: NC_003197:2870268:2879247 Salmonella typhimurium LT2, complete genome

Start: 2879247, End: 2879414, Length: 168

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016857:2871689:290181229018122901979168Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative integrase7e-25112
NC_011083:2847318:285375428537542853921168Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-25112
NC_009648:3224495:3231820323182032330671248Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative integrase4e-24110
NC_011751:3048490:3049026304902630502731248Escherichia coli UMN026 chromosome, complete genomeprophage CP4-57 integrase4e-24109
NC_008258:2905413:2913326291332629145491224Shigella flexneri 5 str. 8401, complete genomeprophage CP4-57 integrase4e-1063.5
NC_004741:2741971:2749333274933327505741242Shigella flexneri 2a str. 2457T, complete genomeputative CP4-57-type integrase4e-1063.2
NC_004337:2747917:2754700275470027559411242Shigella flexneri 2a str. 301, complete genomeputative CP4-57-type integrase4e-1063.2
NC_017328:2785309:2793582279358227948231242Shigella flexneri 2002017 chromosome, complete genomeputative CP4-57-type integrase4e-1063.2
NC_012880:3748665:3775059377505937763001242Dickeya dadantii Ech703, complete genomeintegrase family protein4e-0960.1
NC_020181:5130513:5157669515766951589101242Enterobacter aerogenes EA1509E, complete genomeProphage CP4-57 integrase4e-0960.1
NC_014500:842493:8582948582948595321239Dickeya dadantii 3937 chromosome, complete genomePhage integrase6e-0959.3
CU928145:2973968:2979298297929829805391242Escherichia coli 55989 chromosome, complete genomeintegrase; CP4-57 prophage9e-0958.9
NC_011748:2973968:2979298297929829805391242Escherichia coli 55989, complete genomeintegrase9e-0958.9
NC_020064:3609844:3617299361729936185401242Serratia marcescens FGI94, complete genomeIntegrase1e-0858.5
NC_010634:1342393:1355589135558913568301242Yersinia pseudotuberculosis PB1/+, complete genomeintegrase family protein1e-0858.5
CP002185:2919752:2927054292705429282831230Escherichia coli W, complete genomeputative prophage integrase2e-0857.8
NC_016612:28451:3273032730339711242Klebsiella oxytoca KCTC 1686 chromosome, complete genomeintegrase2e-0857.8
NC_012759:2633949:2639993263999326412341242Escherichia coli BW2952 chromosome, complete genomeintegrase2e-0857.8
NC_000913:2746886:2754181275418127554221242Escherichia coli K12, complete genomeCP4-57 prophage; integrase2e-0857.8
AC_000091:2747520:2754815275481527560561242Escherichia coli W3110 DNA, complete genomeintegrase2e-0857.8
AP010958:3238742:3244745324474532459741230Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase2e-0857.8
CP002516:1165726:1177574117757411788031230Escherichia coli KO11, complete genomeintegrase family protein2e-0857.8
NC_011415:3006794:3014953301495330161821230Escherichia coli SE11 chromosome, complete genomephage integrase2e-0857.8
NC_013353:3238742:3244745324474532459741230Escherichia coli O103:H2 str. 12009, complete genomeintegrase2e-0857.8
NC_013361:3651150:3659305365930536605341230Escherichia coli O26:H11 str. 11368 chromosome, complete genomeintegrase2e-0857.8
NC_016902:1165726:1177574117757411788031230Escherichia coli KO11FL chromosome, complete genomeintegrase family protein2e-0857.8
NC_020260:603796:6373456373456385861242Cronobacter sakazakii Sp291, complete genomeintegrase2e-0857.8
NC_013941:3300000:3313387331338733146161230Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family protein2e-0857.8
NC_008800:1090000:1114774111477411160031230Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative prophage integrase3e-0857.4
NC_010694:1052722:1083497108349710846601164Erwinia tasmaniensis, complete genomePhage integrase4e-0857
NC_004603:1115134:1127706112770611289441239Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeintegrase, phage family9e-0855.5
NC_011094:2791719:2797034279703427983051272Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase family protein1e-0755.1
NC_013364:3339768:334624133462413346963723Escherichia coli O111:H- str. 11128, complete genome2e-0754.7
NC_015224:3587500:3594873359487335961561284Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative prophage integrase3e-0753.9
NC_009792:3665369:3673469367346936747401272Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-0753.9
NC_010067:191190:2151992151992164701272Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0753.5
NC_017986:1885613:1900835190083519020911257Pseudomonas putida ND6 chromosome, complete genomephage integrase family protein4e-0753.5
NC_012691:2476223:2484079248407924853261248Tolumonas auensis DSM 9187, complete genomeintegrase family protein7e-0752.8
NC_012947:1106000:1116151111615111173801230Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase6e-0752.8
NC_012967:2669182:2677417267741726786461230Escherichia coli B str. REL606 chromosome, complete genomeFels-2 prophage protein6e-0752.8
NC_010322:5293652:5298977529897753002331257Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein6e-0752.8
NC_007492:857428:8773888773888786441257Pseudomonas fluorescens PfO-1, complete genomePhage integrase6e-0752.8
NC_002505:1892430:189740218974021897878477Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete9e-0752.4
NC_009457:1444449:145051514505151450991477Vibrio cholerae O395 chromosome 2, complete sequenceintegrase, truncation9e-0752.4
NC_012578:1838470:184453618445361845012477Vibrio cholerae M66-2 chromosome I, complete sequence9e-0752.4
NC_012582:1976962:198193419819341982410477Vibrio cholerae O395 chromosome chromosome I, complete sequence9e-0752.4
NC_016445:1363831:136882413688241369279456Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completephage integrase9e-0752.4
NC_020209:3874844:3880916388091638821751260Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein9e-0752.4
NC_016514:3573400:3580503358050335818131311Enterobacter cloacae EcWSU1 chromosome, complete genomeprophage CP4-57 integrase9e-0752.4
NC_009801:2898426:2906374290637429076841311Escherichia coli E24377A, complete genomephage integrase family protein8e-0752.4
NC_016944:1937645:194377419437741944187414Vibrio cholerae IEC224 chromosome I, complete sequencephage integrase7e-0752.4
NC_015379:908904:9688839688839701391257Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative integrase1e-0651.6
NC_014153:2187409:2201496220149622026741179Thiomonas intermedia K12 chromosome, complete genomeintegrase family protein1e-0651.6
NC_013456:2984491:2985576298557629868231248Vibrio sp. Ex25 chromosome 1, complete genomephage integrase2e-0651.2
NC_014500:2019113:2046545204654520477951251Dickeya dadantii 3937 chromosome, complete genomePhage integrase3e-0650.8
NC_009092:1441813:1465559146555914667881230Shewanella loihica PV-4, complete genomephage integrase family protein2e-0650.8
NC_009457:351512:4035974035974048651269Vibrio cholerae O395 chromosome 2, complete sequencephage family integrase2e-0650.8
NC_012880:2778795:2778795277879527800451251Dickeya dadantii Ech703, complete genomeintegrase family protein3e-0650.4
NC_011080:2870428:2878326287832628795191194Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase family protein3e-0650.4
NC_010102:2862178:2868695286869528698911197Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-0650.4
NC_007912:3466966:3472237347223734734901254Saccharophagus degradans 2-40, complete genomephage integrase4e-0650.1
NC_011992:3375929:3381510338151033827961287Acidovorax ebreus TPSY, complete genomeintegrase family protein7e-0649.3