Pre_GI: BLASTN Hits

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Query: NC_003155:7453994 Streptomyces avermitilis MA-4680, complete genome

Start: 7453994, End: 7481642, Length: 27649

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013740:15401*154013926023860Acidaminococcus fermentans DSM 20731, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015138:42467874246787426900822222Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete4e-24121BLASTN svgBLASTP svg
NC_015422:3836911*3836911386031223402Alicycliphilus denitrificans K601 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_014550:2091797*2091797212997638180Arthrobacter arilaitensis Re117, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011886:1891077*1891077192459933523Arthrobacter chlorophenolicus A6, complete genome2e-20109BLASTN svgBLASTP svg
NC_018531:1900619*1900619194181741199Arthrobacter sp. Rue61a chromosome, complete genome2e-44188BLASTN svgBLASTP svg
NC_008702:40644704064470409211327644Azoarcus sp. BH72, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_008702:36996536996539538125417Azoarcus sp. BH72, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_021150:68251682518837920129Azotobacter vinelandii CA6, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012560:68251682518837920129Azotobacter vinelandii DJ, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010551:1462827*1462827148416621340Burkholderia ambifaria MC40-6 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_010552:20891402089140211228223143Burkholderia ambifaria MC40-6 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_010557:67965667965674320963554Burkholderia ambifaria MC40-6 chromosome 3, complete sequence9e-1073.8BLASTN svgBLASTP svg
NC_008060:1544920*1544920156855223633Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_008061:42850142850144790319403Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008543:20352922035292205318117890Burkholderia cenocepacia HI2424 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_008544:615448*61544864197226525Burkholderia cenocepacia HI2424 chromosome 3, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_010515:23581342358134238144223309Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_010512:1196616*1196616122450027885Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_012724:32224153222415324513122717Burkholderia glumae BGR1 chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008785:91441191441194029125881Burkholderia mallei SAVP1 chromosome II, complete sequence6e-1487.7BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete3e-0661.9BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete3e-0661.9BLASTN svgBLASTP svg
NC_010676:26584952658495270919750703Burkholderia phytofirmans PsJN chromosome 2, complete sequence8e-0763.9BLASTN svgBLASTP svg
NC_009078:142794*14279417264129848Burkholderia pseudomallei 1106a chromosome II, complete sequence8e-0763.9BLASTN svgBLASTP svg
NC_007435:19811641981164201096229799Burkholderia pseudomallei 1710b chromosome II, complete sequence8e-0763.9BLASTN svgBLASTP svg
NC_006351:14278814278817240329616Burkholderia pseudomallei K96243 chromosome 2, complete sequence8e-0763.9BLASTN svgBLASTP svg
NC_007511:71949371949373920719715Burkholderia sp. 383 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_013131:8480384*8480384852686646483Catenulispora acidiphila DSM 44928, complete genome2e-20109BLASTN svgBLASTP svg
NC_015671:19500811950081197227622196Cellvibrio gilvus ATCC 13127 chromosome, complete genome1e-39172BLASTN svgBLASTP svg
NC_010407:24061132406113242499918887Clavibacter michiganensis subsp. sepedonicus chromosome, complete9e-1073.8BLASTN svgBLASTP svg
NC_012704:1641684*1641684166548523802Corynebacterium kroppenstedtii DSM 44385, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012526:4462*44622702622565Deinococcus deserti VCD115, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014844:26389942638994265855019557Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_008751:27740002774000279735623357Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002937:61400061400064122427225Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete1e-0869.9BLASTN svgBLASTP svg
NC_008278:5012000*5012000505245140452Frankia alni ACN14a, complete genome1e-24123BLASTN svgBLASTP svg
NC_015656:2484749*2484749251548430736Frankia symbiont of Datisca glomerata chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_005125:28119862811986285535243367Gloeobacter violaceus PCC 7421, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018581:3202281*3202281322702624746Gordonia sp. KTR9 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013440:60457086045708606679721090Haliangium ochraceum DSM 14365, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015948:2421933*2421933244059218660Haloarcula hispanica ATCC 33960 chromosome chromosome I, complete1e-0869.9BLASTN svgBLASTP svg
NC_014830:1871135*1871135190186430730Intrasporangium calvum DSM 43043 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010617:13972741397274142856131288Kocuria rhizophila DC2201, complete genome1e-18103BLASTN svgBLASTP svg
NC_008705:3201817*3201817322309921283Mycobacterium sp. KMS, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_015711:3085038*3085038311227427237Myxococcus fulvus HW-1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015711:3546500*3546500357174025241Myxococcus fulvus HW-1 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_018524:4049990*4049990407854328554Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome8e-38167BLASTN svgBLASTP svg
NC_014210:3763940*3763940379109927160Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-47198BLASTN svgBLASTP svg
NC_012917:27862832786283280578619504Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004129:43333024333302435159918298Pseudomonas fluorescens Pf-5, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015556:819503*81950384290123399Pseudomonas fulva 12-X chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_015556:4074367*4074367410534530979Pseudomonas fulva 12-X chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_005773:69499069499072559930610Pseudomonas syringae pv. phaseolicola 1448A, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_004578:61386696138669616309624428Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012522:58476995847699587179324095Rhodococcus opacus B4, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_005296:45742134574213461698142769Rhodopseudomonas palustris CGA009, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008148:2053467*2053467207149018024Rubrobacter xylanophilus DSM 9941, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013159:1225866*1225866124823622371Saccharomonospora viridis DSM 43017, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_019673:13847951384795141142926635Saccharothrix espanaensis DSM 44229 complete genome2e-19105BLASTN svgBLASTP svg
NC_013521:2254534*2254534227574521212Sanguibacter keddieii DSM 10542, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_021177:17368541736854177659939746Streptomyces fulvissimus DSM 40593, complete genome01687BLASTN svgBLASTP svg
NC_010572:6463939*6463939649468830750Streptomyces griseus subsp. griseus NBRC 13350, complete genome01626BLASTN svgBLASTP svg
NC_015953:1581542*1581542160650824967Streptomyces sp. SirexAA-E chromosome, complete genome01816BLASTN svgBLASTP svg
NC_018750:18355001835500185771922220Streptomyces venezuelae ATCC 10712, complete genome01011BLASTN svgBLASTP svg
NC_018750:26687832668783269022121439Streptomyces venezuelae ATCC 10712, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015957:8103472*8103472812858025109Streptomyces violaceusniger Tu 4113 chromosome, complete genome01102BLASTN svgBLASTP svg
NC_014831:78601178601180816322153Thermaerobacter marianensis DSM 12885 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013510:3324978*3324978334783522858Thermomonospora curvata DSM 43183, complete genome3e-40174BLASTN svgBLASTP svg
NC_014158:2561441*2561441258525523815Tsukamurella paurometabola DSM 20162 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_012791:22330982233098225286719770Variovorax paradoxus S110 chromosome 1, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008786:3323167*3323167337505651890Verminephrobacter eiseniae EF01-2, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013722:24762362476236250064524410Xanthomonas albilineans, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015224:27903727903730366824632Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-0763.9BLASTN svgBLASTP svg