Query: NC_003155:4906639 Streptomyces avermitilis MA-4680, complete genome
Start: 4906639, End: 4931780, Length: 25142
Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_013093:1411882* | 1411882 | 1438302 | 26421 | Actinosynnema mirum DSM 43827, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_013093:1213908* | 1213908 | 1243375 | 29468 | Actinosynnema mirum DSM 43827, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_013739:5705325* | 5705325 | 5739099 | 33775 | Conexibacter woesei DSM 14684, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014830:3275474* | 3275474 | 3298099 | 22626 | Intrasporangium calvum DSM 43043 chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_013729:2157785* | 2157785 | 2194099 | 36315 | Kribbella flavida DSM 17836, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_014391:6000834 | 6000834 | 6023897 | 23064 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014391:4570567 | 4570567 | 4591349 | 20783 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_014815:3005970 | 3005970 | 3026538 | 20569 | Micromonospora sp. L5 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_020133:902000 | 902000 | 925525 | 23526 | Mycobacterium liflandii 128FXT, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010612:957786 | 957786 | 981862 | 24077 | Mycobacterium marinum M, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013235:682902 | 682902 | 707663 | 24762 | Nakamurella multipartita DSM 44233, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014210:144036 | 144036 | 163801 | 19766 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_014210:723719 | 723719 | 749155 | 25437 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_015312:5579078 | 5579078 | 5601456 | 22379 | Pseudonocardia dioxanivorans CB1190 chromosome, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_019673:8799533* | 8799533 | 8834426 | 34894 | Saccharothrix espanaensis DSM 44229 complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_019673:1275627* | 1275627 | 1310119 | 34493 | Saccharothrix espanaensis DSM 44229 complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_019673:8581000* | 8581000 | 8608341 | 27342 | Saccharothrix espanaensis DSM 44229 complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_013947:1696671 | 1696671 | 1724340 | 27670 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_003155:4592000 | 4592000 | 4636144 | 44145 | Streptomyces avermitilis MA-4680, complete genome | 0 | 3207 | BLASTN svg | BLASTP svg |
NC_003155:3652587* | 3652587 | 3695773 | 43187 | Streptomyces avermitilis MA-4680, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_003888:6103534* | 6103534 | 6155446 | 51913 | Streptomyces coelicolor A3(2), complete genome | 2e-32 | 149 | BLASTN svg | BLASTP svg |
NC_003888:4613000 | 4613000 | 4631465 | 18466 | Streptomyces coelicolor A3(2), complete genome | 0 | 817 | BLASTN svg | BLASTP svg |
NC_003888:4377000* | 4377000 | 4395579 | 18580 | Streptomyces coelicolor A3(2), complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_003888:5790104* | 5790104 | 5820643 | 30540 | Streptomyces coelicolor A3(2), complete genome | 1e-70 | 276 | BLASTN svg | BLASTP svg |
NC_003888:3602753 | 3602753 | 3626462 | 23710 | Streptomyces coelicolor A3(2), complete genome | 5e-51 | 210 | BLASTN svg | BLASTP svg |
NC_021177:3997727* | 3997727 | 4019254 | 21528 | Streptomyces fulvissimus DSM 40593, complete genome | 8e-53 | 216 | BLASTN svg | BLASTP svg |
NC_021177:2034722 | 2034722 | 2058510 | 23789 | Streptomyces fulvissimus DSM 40593, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_021177:4258102* | 4258102 | 4279581 | 21480 | Streptomyces fulvissimus DSM 40593, complete genome | 2e-41 | 178 | BLASTN svg | BLASTP svg |
NC_010572:3925803* | 3925803 | 3956287 | 30485 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 3e-49 | 204 | BLASTN svg | BLASTP svg |
NC_010572:4181403 | 4181403 | 4206099 | 24697 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 1e-39 | 172 | BLASTN svg | BLASTP svg |
NC_015953:4045500 | 4045500 | 4065599 | 20100 | Streptomyces sp. SirexAA-E chromosome, complete genome | 2e-127 | 464 | BLASTN svg | BLASTP svg |
NC_018750:3249756* | 3249756 | 3273188 | 23433 | Streptomyces venezuelae ATCC 10712, complete genome | 2e-32 | 149 | BLASTN svg | BLASTP svg |
NC_018750:4333064 | 4333064 | 4360468 | 27405 | Streptomyces venezuelae ATCC 10712, complete genome | 6e-32 | 147 | BLASTN svg | BLASTP svg |
NC_018750:2118907 | 2118907 | 2143355 | 24449 | Streptomyces venezuelae ATCC 10712, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013595:9547254* | 9547254 | 9578639 | 31386 | Streptosporangium roseum DSM 43021, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_013595:151500 | 151500 | 178599 | 27100 | Streptosporangium roseum DSM 43021, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_014165:92500 | 92500 | 110099 | 17600 | Thermobispora bispora DSM 43833 chromosome, complete genome | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_013510:5115500* | 5115500 | 5143285 | 27786 | Thermomonospora curvata DSM 43183, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_015434:228912* | 228912 | 252627 | 23716 | Verrucosispora maris AB-18-032 chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |