Pre_GI: BLASTN Hits

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Query: NC_003155:4906639 Streptomyces avermitilis MA-4680, complete genome

Start: 4906639, End: 4931780, Length: 25142

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013093:1411882*1411882143830226421Actinosynnema mirum DSM 43827, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013093:1213908*1213908124337529468Actinosynnema mirum DSM 43827, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_013739:5705325*5705325573909933775Conexibacter woesei DSM 14684, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014830:3275474*3275474329809922626Intrasporangium calvum DSM 43043 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013729:2157785*2157785219409936315Kribbella flavida DSM 17836, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014391:60008346000834602389723064Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014391:45705674570567459134920783Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014815:30059703005970302653820569Micromonospora sp. L5 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_020133:90200090200092552523526Mycobacterium liflandii 128FXT, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010612:95778695778698186224077Mycobacterium marinum M, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013235:68290268290270766324762Nakamurella multipartita DSM 44233, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014210:14403614403616380119766Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,3e-1281.8BLASTN svgBLASTP svg
NC_014210:72371972371974915525437Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-19105BLASTN svgBLASTP svg
NC_015312:55790785579078560145622379Pseudonocardia dioxanivorans CB1190 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_019673:1275627*1275627131011934493Saccharothrix espanaensis DSM 44229 complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019673:8581000*8581000860834127342Saccharothrix espanaensis DSM 44229 complete genome3e-1281.8BLASTN svgBLASTP svg
NC_019673:8799533*8799533883442634894Saccharothrix espanaensis DSM 44229 complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013947:16966711696671172434027670Stackebrandtia nassauensis DSM 44728 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome03207BLASTN svgBLASTP svg
NC_003155:3652587*3652587369577343187Streptomyces avermitilis MA-4680, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome2e-32149BLASTN svgBLASTP svg
NC_003888:46130004613000463146518466Streptomyces coelicolor A3(2), complete genome0817BLASTN svgBLASTP svg
NC_003888:4377000*4377000439557918580Streptomyces coelicolor A3(2), complete genome2e-22115BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome1e-70276BLASTN svgBLASTP svg
NC_003888:36027533602753362646223710Streptomyces coelicolor A3(2), complete genome5e-51210BLASTN svgBLASTP svg
NC_021177:3997727*3997727401925421528Streptomyces fulvissimus DSM 40593, complete genome8e-53216BLASTN svgBLASTP svg
NC_021177:20347222034722205851023789Streptomyces fulvissimus DSM 40593, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_021177:4258102*4258102427958121480Streptomyces fulvissimus DSM 40593, complete genome2e-41178BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-49204BLASTN svgBLASTP svg
NC_010572:41814034181403420609924697Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-39172BLASTN svgBLASTP svg
NC_015953:40455004045500406559920100Streptomyces sp. SirexAA-E chromosome, complete genome2e-127464BLASTN svgBLASTP svg
NC_018750:43330644333064436046827405Streptomyces venezuelae ATCC 10712, complete genome6e-32147BLASTN svgBLASTP svg
NC_018750:21189072118907214335524449Streptomyces venezuelae ATCC 10712, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018750:3249756*3249756327318823433Streptomyces venezuelae ATCC 10712, complete genome2e-32149BLASTN svgBLASTP svg
NC_013595:9547254*9547254957863931386Streptosporangium roseum DSM 43021, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_013595:15150015150017859927100Streptosporangium roseum DSM 43021, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014165:925009250011009917600Thermobispora bispora DSM 43833 chromosome, complete genome1e-23119BLASTN svgBLASTP svg
NC_013510:5115500*5115500514328527786Thermomonospora curvata DSM 43183, complete genome1e-20109BLASTN svgBLASTP svg
NC_015434:228912*22891225262723716Verrucosispora maris AB-18-032 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg