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Query: NC_003155:365500 Streptomyces avermitilis MA-4680, complete genome

Start: 365500, End: 385099, Length: 19600

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003155:32097932097933918518207Streptomyces avermitilis MA-4680, complete genome02639BLASTN svgBLASTP svg
NC_003155:210240*21024026219151952Streptomyces avermitilis MA-4680, complete genome01620BLASTN svgBLASTP svg
NC_015957:88452748845274887561630343Streptomyces violaceusniger Tu 4113 chromosome, complete genome0688BLASTN svgBLASTP svg
NC_015957:11513311513313815023018Streptomyces violaceusniger Tu 4113 chromosome, complete genome0688BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome0666BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome0660BLASTN svgBLASTP svg
NC_003888:6470909*6470909649144220534Streptomyces coelicolor A3(2), complete genome5e-143515BLASTN svgBLASTP svg
NC_015953:2349503*2349503238809938597Streptomyces sp. SirexAA-E chromosome, complete genome1e-103385BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome2e-96361BLASTN svgBLASTP svg
NC_015957:51824605182460522128438825Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-83317BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome4e-45190BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome2e-37165BLASTN svgBLASTP svg
NC_008278:74097117409711743227422564Frankia alni ACN14a, complete genome8e-37163BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome8e-31143BLASTN svgBLASTP svg
NC_015434:3581001*3581001361002729027Verrucosispora maris AB-18-032 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_019673:6298342*6298342632793229591Saccharothrix espanaensis DSM 44229 complete genome8e-28133BLASTN svgBLASTP svg
NC_013235:17615391761539178059919061Nakamurella multipartita DSM 44233, complete genome1e-26129BLASTN svgBLASTP svg
NC_003155:883500*88350090259219093Streptomyces avermitilis MA-4680, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008278:5012000*5012000505245140452Frankia alni ACN14a, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009921:1645380*1645380166750622127Frankia sp. EAN1pec, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009921:3384116*3384116340895324838Frankia sp. EAN1pec, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014391:621062*62106264468923628Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007777:12960001296000131759921600Frankia sp. CcI3, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015957:19600019600021778021781Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007333:174389017438901873648129759Thermobifida fusca YX, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_019673:63943196394319646135767039Saccharothrix espanaensis DSM 44229 complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009921:3551036*3551036362235971324Frankia sp. EAN1pec, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014391:19102731910273196409853826Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_021150:16273471627347165194824602Azotobacter vinelandii CA6, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013595:48000048000050266322664Streptosporangium roseum DSM 43021, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008699:1067855*1067855111667748823Nocardioides sp. JS614, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008699:56500565008084424345Nocardioides sp. JS614, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015312:1*12465124651Pseudonocardia dioxanivorans CB1190 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015312:32908873290887331210321217Pseudonocardia dioxanivorans CB1190 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_019673:6362458*6362458639102228565Saccharothrix espanaensis DSM 44229 complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014318:63953926395392646309967708Amycolatopsis mediterranei U32 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012803:15191381519138153782318686Micrococcus luteus NCTC 2665, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_003155:29987329987331809918227Streptomyces avermitilis MA-4680, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014391:4617688*4617688463728919602Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014391:27755527755529871021156Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014391:2579919*2579919261467434756Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014391:1967167*1967167200915941993Micromonospora aurantiaca ATCC 27029 chromosome, complete genome9e-0660BLASTN svgBLASTP svg