Pre_GI: BLASTP Hits

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Query: NC_003155:7979050:7999599 Streptomyces avermitilis MA-4680, complete genome

Start: 7999599, End: 7999973, Length: 375

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:1751179:175227017522701752641372Streptomyces coelicolor A3(2), complete genomepeptidyl-prolyl cis-trans isomerase9e-52201
NC_007164:511171:512568512568512927360Corynebacterium jeikeium K411, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase8e-27119
NC_010546:3071377:307216430721643072730567Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceFKBP-type peptidyl-prolyl cis-trans isomerase4e-23106
NC_007005:2686551:271676227167622717136375Pseudomonas syringae pv. syringae B728a, complete genomePeptidylprolyl isomerase, FKBP-type5e-23106
NC_005773:3253575:327239132723913272810420Pseudomonas syringae pv. phaseolicola 1448A, complete genomepeptidyl-prolyl cis-trans isomerase, FKBP-type3e-22103
NC_020156:49666:548825488255814933Nonlabens dokdonensis DSW-6, complete genomepeptidyl-prolyl cis-trans isomerase2e-21100
NC_014212:319815:335933335933336430498Meiothermus silvanus DSM 9946 chromosome, complete genomePeptidylprolyl isomerase5e-2096.3
NC_014924:1701952:172120217212021721642441Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomePeptidylprolyl isomerase8e-2095.5
NC_017387:1110412:113072511307251131066342Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase 11e-1995.1
NC_003155:7979050:7998523799852379995271005Streptomyces avermitilis MA-4680, complete genomeFK-506 binding protein, peptidyl-prolyl cis-trans isomerase2e-1994.4
NC_014738:55782:6292562925640071083Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,peptidyl-prolyl isomerase4e-1993.6
NC_010688:2781624:278279127827912783276486Xanthomonas campestris pv. campestris, complete genomepeptidylprolyl isomerase4e-1993.2
NC_013729:5497814:550308855030885504038951Kribbella flavida DSM 17836, complete genomepeptidylprolyl isomerase FKBP-type6e-1992.8
NC_007498:357484:367411367411368106696Pelobacter carbinolicus DSM 2380, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase1e-1892
NC_017513:9081:260582605826387330Neisseria meningitidis G2136 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase1e-1892
NC_003888:1751179:1752701175270117537081008Streptomyces coelicolor A3(2), complete genomesecreted peptidyl-prolyl cis-trans isomerase protein2e-1684
NC_012968:435532:446930446930447655726Methylotenera mobilis JLW8, complete genomepeptidylprolyl isomerase FKBP-type5e-1683.2
NC_012918:2569681:258745525874552588114660Geobacter sp. M21 chromosome, complete genomepeptidyl-prolyl isomerase2e-1581.3
NC_015501:938196:954174954174954899726Porphyromonas asaccharolytica DSM 20707 chromosome, completePeptidylprolyl isomerase3e-1580.5
NC_008309:1851189:186901818690181869704687Haemophilus somnus 129PT, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)4e-1580.1
NC_011146:2304475:230879823087982309457660Geobacter bemidjiensis Bem, complete genomepeptidylprolyl isomerase FKBP-type5e-1579.7
NC_010519:2033980:205002820500282050714687Haemophilus somnus 2336 chromosome, complete genomeFKBP-type peptidylprolyl isomerase4e-1579.7
NC_008255:4208913:420891342089134209806894Cytophaga hutchinsonii ATCC 33406, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)1e-1478.2
NC_015501:938196:954913954913955503591Porphyromonas asaccharolytica DSM 20707 chromosome, completePeptidylprolyl isomerase5e-1476.3
NC_013714:2203854:220621622062162207028813Bifidobacterium dentium Bd1, complete genomepossible secreted peptidyl-prolyl cis-trans isomerase protein6e-1476.3
NC_007333:2674596:268823026882302689159930Thermobifida fusca YX, complete genomesimilar to FKBP-type peptidyl-prolyl cis-trans isomerase 18e-1475.9
NC_015376:3249773:326269232626923263090399Burkholderia gladioli BSR3 chromosome chromosome 2, completePeptidylprolyl isomerase, FKBP-type9e-1475.5
NC_015656:4850833:485825448582544858583330Frankia symbiont of Datisca glomerata chromosome, complete genomepeptidylprolyl isomerase1e-1375.1
NC_011663:1500772:152219715221971522667471Shewanella baltica OS223 chromosome, complete genomeFKBP-type peptidylprolyl isomerase1e-1375.1
NC_012214:594667:603722603722604414693Erwinia pyrifoliae Ep1/96, complete genomeFkbP-type peptidyl-prolyl cis-trans isomerase2e-1374.7
NC_013037:5587802:559492055949205595699780Dyadobacter fermentans DSM 18053, complete genomepeptidylprolyl isomerase FKBP-type1e-1272
NC_009483:3544333:3544333354433335461351803Geobacter uraniireducens Rf4 chromosome, complete genomeFKBP-type peptidylprolyl isomerase1e-1271.6
NC_013730:2751484:278719527871952787647453Spirosoma linguale DSM 74, complete genomepeptidylprolyl isomerase FKBP-type1e-1271.6
NC_018748:2119679:213620521362052136951747Emticicia oligotrophica DSM 17448 chromosome, complete genomepeptidylprolyl isomerase FKBP-type8e-1268.9
NC_012660:2143376:219901921990192199750732Pseudomonas fluorescens SBW25 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase3e-1167
NC_015389:809474:814299814299814730432Coriobacterium glomerans PW2 chromosome, complete genomepeptidylprolyl isomerase FKBP-type4e-1166.6
NC_007517:3524715:354407135440713544505435Geobacter metallireducens GS-15, complete genomePeptidylprolyl isomerase, FKBP-type6e-1166.2
NC_014246:651801:655822655822656403582Mobiluncus curtisii ATCC 43063 chromosome, complete genomepeptidylprolyl isomerase FKBP family protein6e-1166.2
NC_016604:5067562:506756250675625068245684Mycobacterium rhodesiae NBB3 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase5e-1063.2
NC_013508:3387272:341072434107243411548825Edwardsiella tarda EIB202, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)9e-1062.4
NC_018080:1730534:173587917358791736640762Pseudomonas aeruginosa DK2 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase1e-0962
NC_017259:523840:544458544458545219762Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,FKBP-type peptidyl-prolyl cis-trans isomerase FkpA1e-0962
NC_014363:427393:449910449910450341432Olsenella uli DSM 7084 chromosome, complete genomepeptidylprolyl isomerase FKBP-type2e-0960.8
NC_014814:2588628:264124626412462641824579Mycobacterium sp. Spyr1 chromosome, complete genomeFKBP-type peptidyl-prolyl cis-trans isomerase3e-0960.5
NC_016818:362548:362548362548363408861Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeFKBP-type peptidyl-prolyl cis-trans isomerase9e-0958.9
NC_011834:546738:567390567390568115726Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,FKBP-type peptidyl-prolyl cis-trans isomerase FkpA2e-0857.4
NC_012780:430653:433209433209434123915Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencepeptidylprolyl isomerase3e-0857.4
NC_007492:3954345:398654439865443986747204Pseudomonas fluorescens PfO-1, complete genomePeptidylprolyl isomerase, FKBP-type3e-0857
NC_011027:303000:323670323670324098429Chlorobaculum parvum NCIB 8327, complete genomepeptidylprolyl isomerase FKBP-type1e-0755.1
NC_015682:205900:241414241414241878465Thermodesulfobacterium sp. OPB45 chromosome, complete genomeFKBP-type peptidylprolyl isomerase3e-0753.9
NC_011146:4070000:407330240733024073754453Geobacter bemidjiensis Bem, complete genomepeptidylprolyl isomerase FKBP-type4e-0753.5
NC_004663:163152:175455175455175856402Bacteroides thetaiotaomicron VPI-5482, complete genomepeptidyl-prolyl cis-trans isomerase7e-0752.8
NC_014158:1566310:157089415708941571445552Tsukamurella paurometabola DSM 20162 chromosome, complete genomepeptidylprolyl isomerase FKBP-type6e-0752.8
NC_009135:330628:365972365972366424453Methanococcus maripaludis C5, complete genomepeptidylprolyl isomerase, FKBP-type1e-0652
NC_009975:1374500:138974313897431390195453Methanococcus maripaludis C6, complete genomepeptidylprolyl isomerase FKBP-type1e-0651.6
NC_015501:938196:953272953272954129858Porphyromonas asaccharolytica DSM 20707 chromosome, completepeptidylprolyl isomerase FKBP-type2e-0651.2
NC_007912:4661141:467991946799194680347429Saccharophagus degradans 2-40, complete genomepeptidyl-prolyl cis-trans isomerase FkpA, FKBP-type4e-0650.1
NC_014507:1558286:157051515705151571111597Methanoplanus petrolearius DSM 11571 chromosome, complete genomeFKBP-type peptidylprolyl isomerase4e-0650.1