Pre_GI: BLASTP Hits

Some Help

Query: NC_003155:5443230:5460989 Streptomyces avermitilis MA-4680, complete genome

Start: 5460989, End: 5461831, Length: 843

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6526745:653513365351336535969837Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein3e-64244
NC_003888:4927170:495958449595844960435852Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-62239
NC_003155:5005913:500736750073675008239873Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein1e-59229
NC_016111:4613599:461942546194254620279855Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein2e-56219
NC_015957:8845274:886036588603658861210846Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative DNA-binding protein3e-53208
NC_016582:4874500:489859048985904899270681Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein7e-47187
NC_016582:4934854:494431449443144945195882Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein7e-35147
NC_016109:4455158:445779244577924458400609Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator3e-29129
NC_014165:2888961:290308629030862903943858Thermobispora bispora DSM 43833 chromosome, complete genomehelix-turn-helix domain-containing protein9e-27120
NC_014666:8198554:822022582202258221091867Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein2e-26119
NC_013510:5309143:531986853198685320725858Thermomonospora curvata DSM 43183, complete genomehelix-turn-helix domain protein9e-26117
NC_003888:3111998:312209131220913122933843Streptomyces coelicolor A3(2), complete genomeregulatory protein5e-25114
NC_014666:1117000:113569311356931136553861Frankia sp. EuI1c chromosome, complete genomehelix-turn-helix domain protein5e-24111
NC_016111:3577572:358466335846633585508846Streptomyces cattleya NRRL 8057, complete genomeregulatory protein7e-23107
NC_015957:336500:343902343902344747846Streptomyces violaceusniger Tu 4113 chromosome, complete genomehelix-turn-helix domain-containing protein1e-22106
NC_013595:8603188:862421786242178625092876Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, XRE family6e-22104
NC_013595:8338619:834680983468098347672864Streptosporangium roseum DSM 43021, complete genomehypothetical protein7e-21101
NC_016582:3763476:377266637726663773532867Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative DNA-binding protein6e-21101
NC_017093:8518961:852462485246248525514891Actinoplanes missouriensis 431, complete genomeputative DNA-binding protein7e-1994.4
NC_018750:6192970:620089562008956201815921Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein3e-1892.8
NC_016582:4073850:409043740904374090763327Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein5e-1891.7
NC_014830:13179:256642566426587924Intrasporangium calvum DSM 43043 chromosome, complete genomehelix-turn-helix domain protein8e-1890.9
NC_003155:6295078:630347763034776304325849Streptomyces avermitilis MA-4680, complete genomeDNA-binding protein3e-1789.4
NC_016582:6999074:701136370113637012175813Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein5e-1788.6
NC_008278:132000:141420141420142196777Frankia alni ACN14a, complete genomePutative DNA-binding protein6e-1788.2
NC_007333:430000:437708437708438553846Thermobifida fusca YX, complete genomehelix-turn-helix motif9e-1787.4
NC_007777:461500:470552470552471442891Frankia sp. CcI3, complete genomeputative DNA-binding protein1e-1687
NC_013929:6343000:635516563551656355971807Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein6e-1684.7
NC_007333:1129826:114288611428861143740855Thermobifida fusca YX, complete genomehelix-turn-helix motif1e-1583.6
NC_014210:618500:636013636013636870858Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,helix-turn-helix domain protein2e-1583.2
NC_016887:1949927:196913919691391969894756Nocardia cyriacigeorgica GUH-2, complete genomeXRE family transcriptional regulator4e-1582
NC_013947:4695000:470870947087094709560852Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehelix-turn-helix domain-containing protein5e-1582
NC_009380:1491428:151443915144391515320882Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein1e-1480.9
NC_018681:2176000:218106721810672181957891Nocardia brasiliensis ATCC 700358 chromosome, complete genomeXRE family transcriptional regulator8e-1580.9
NC_018750:6950695:697001969700196970894876Streptomyces venezuelae ATCC 10712, complete genomeputative DNA-binding protein1e-1480.5
NC_013093:7174636:717771371777137178570858Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family2e-1479.7
NC_019673:1275627:130579813057981306682885Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1479.3
NC_016887:4403872:441600344160034416932930Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA binding protein3e-1479.3
NC_015434:4640769:464580646458064646765960Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1377
NC_014210:1588426:160049716004971601357861Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family4e-1375.5
NC_015953:3313000:332751533275153328384870Streptomyces sp. SirexAA-E chromosome, complete genomeXRE family transcriptional regulator4e-1375.5
NC_013929:7663631:766986276698627670857996Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein5e-1375.1
NC_015953:3258000:326489932648993265825927Streptomyces sp. SirexAA-E chromosome, complete genomehelix-turn-helix domain-containing protein2e-1273.6
NC_016887:511034:520181520181521056876Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein5e-1271.6
NC_008278:6885254:690729269072926908092801Frankia alni ACN14a, complete genomeputative DNA-binding protein1e-1170.9
NC_013093:4247811:426232542623254263176852Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, XRE family1e-1170.9
NC_016887:5988878:599475759947575995653897Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein1e-1170.5
NC_016887:55000:701527015270958807Nocardia cyriacigeorgica GUH-2, complete genomeputative DNA-binding protein1e-1170.5
NC_014210:4188448:419437041943704195233864Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family7e-1168.2
NC_013947:656140:666520666520667377858Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1168.2
NC_003888:6568000:657921365792136580073861Streptomyces coelicolor A3(2), complete genomeDNA-binding protein8e-1167.8
NC_013510:2288746:229930422993042300185882Thermomonospora curvata DSM 43183, complete genomehelix-turn-helix domain protein1e-1067.4
NC_016109:4455158:445753844575384457795258Kitasatospora setae KM-6054, complete genomehypothetical protein1e-1067.4
NC_009380:581000:589581589581590393813Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1067
NC_013947:1537275:155630815563081557171864Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein3e-1065.9
NC_013510:5175649:518784851878485188720873Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family5e-1065.5
NC_016582:9459566:946873494687349469609876Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative chitinase-promoter-binding protein6e-1065.1
NC_016111:4645145:465568146556814656007327Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-0963.9
NC_018524:2246225:227205122720512272884834Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelix-turn-helix family protein4e-0962.4
NC_009380:725870:725870725870726763894Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0962
NC_016111:2651500:266677826667782667587810Streptomyces cattleya NRRL 8057, complete genomehypothetical protein4e-0962
NC_013159:1225866:123908512390851239939855Saccharomonospora viridis DSM 43017, complete genomepredicted transcription factor, MBF1 like protein4e-0962
NC_015434:3755560:376664437666443767525882Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix domain-containing protein6e-0961.6
NC_006361:498305:508199508199509092894Nocardia farcinica IFM 10152, complete genomeputative DNA-binding protein6e-0961.6
NC_016582:9076686:908588090858809086767888Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDNA-binding protein8e-0961.2
NC_016111:1546505:156168615616861562519834Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein1e-0860.8
NC_014211:174694:181153181153181977825Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidtranscriptional regulator, XRE family2e-0860.1
NC_007333:2093167:210360821036082104447840Thermobifida fusca YX, complete genomehelix-turn-helix motif3e-0859.3
NC_007333:810381:818333818333818782450Thermobifida fusca YX, complete genomehypothetical protein3e-0859.3
NC_018524:301992:314254314254315090837Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelix-turn-helix family protein3e-0859.3
NC_013510:465188:482165482165483013849Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family4e-0858.9
NC_016582:9664000:967380696738069674723918Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-0858.9
NC_013510:517878:549610549610550413804Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family1e-0757.4
NC_016109:6640000:664741066474106648264855Kitasatospora setae KM-6054, complete genomeputative transcriptional regulator2e-0756.6
NC_016582:9551123:955614895561489556957810Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-0756.2
NC_016111:5515462:552035955203595521216858Streptomyces cattleya NRRL 8057, complete genomeDNA-binding protein4e-0755.5
NC_013595:8553904:856230685623068562959654Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-0653.9
NC_009953:1581088:159099015909901591757768Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein2e-0653.5
NC_013510:5394432:542319154231915424000810Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-0653.1
NC_013510:1614000:161614016161401616946807Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family2e-0652.8
NC_010572:5445081:547374554737455474428684Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0652.8
NC_013510:1637730:164894816489481649778831Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family3e-0652.8
NC_013510:465188:475826475826476707882Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family3e-0652.4
NC_003888:3111998:312441731244173125262846Streptomyces coelicolor A3(2), complete genomeregulatory protein4e-0652
NC_014210:5048502:506004750600475060913867Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, XRE family7e-0651.6
NC_019673:2051363:206851720685172069416900Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein8e-0651.2
NC_016111:1546505:155441115544111555241831Streptomyces cattleya NRRL 8057, complete genomehypothetical protein9e-0650.8