Pre_GI: BLASTP Hits

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Query: NC_003155:3652587:3676424 Streptomyces avermitilis MA-4680, complete genome

Start: 3676424, End: 3677563, Length: 1140

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:170199:1841561841561852741119Thermomonospora curvata DSM 43183, complete genomeDNA sulfur modification protein DndB1e-148526
NC_018681:867230:8762818762818773301050Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein1e-135483
NC_011768:5900500:5922110592211059232041095Desulfatibacillum alkenivorans AK-01, complete genomeDNA sulfur modification protein DndB7e-129460
NC_010397:1099312:1105796110579611069381143Mycobacterium abscessus chromosome Chromosome, complete sequencehypothetical protein2e-119429
NC_007492:857428:8653028653028664291128Pseudomonas fluorescens PfO-1, complete genomehypothetical protein2e-115416
NC_011832:1399446:1405438140543814065801143Candidatus Methanosphaerula palustris E1-9c, complete genomeDNA sulfur modification protein DndB4e-112404
NC_009483:2854500:2856477285647728575531077Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein4e-107388
NC_012483:3672768:3683415368341536844941080Acidobacterium capsulatum ATCC 51196, complete genomeDNA sulfur modification protein DndB1e-106386
NC_019940:2997439:2998690299869029998861197Thioflavicoccus mobilis 8321 chromosome, complete genomeDNA sulfur modification protein DndB4e-106384
NC_018080:2288700:2318082231808223191101029Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein4e-104378
NC_009792:3245368:3260761326076132618461086Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-100366
NC_012691:1743038:1750632175063217517081077Tolumonas auensis DSM 9187, complete genomeDNA sulfur modification protein DndB3e-100365
NC_014012:2411096:2428977242897724300861110Shewanella violacea DSS12, complete genomehypothetical protein2e-99362
NC_009901:2787978:2799563279956328006721110Shewanella pealeana ATCC 700345, complete genomeconserved hypothetical protein6e-98357
NC_009712:334143:3545373545373556791143Candidatus Methanoregula boonei 6A8, complete genomehypothetical protein3e-96352
NC_020064:521500:5429695429695440541086Serratia marcescens FGI94, complete genomeDNA sulfur modification protein DndB7e-96350
NC_013971:3296272:3308504330850433095891086Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid-like protein5e-95348
NC_013961:441719:4617114617114627961086Erwinia amylovora, complete genomehypothetical protein5e-95348
CU928145:4950723:4962836496283649639211086Escherichia coli 55989 chromosome, complete genomeputative DNA thiolation protein; putative phage protein4e-94345
NC_011748:4950723:4962836496283649639211086Escherichia coli 55989, complete genomeputative DNA thiolation protein; putative phage protein4e-94345
NC_011415:4767892:4784058478405847851431086Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-94345
NC_009436:522649:5393805393805404651086Enterobacter sp. 638, complete genomehypothetical protein2e-94345
NC_013282:551219:5729865729865740711086Cronobacter turicensis, complete genomehypothetical protein8e-94343
NC_018643:1080514:1107473110747311085581086Alpha proteobacterium HIMB5 chromosome, complete genomeDNA sulfur modification protein DndB1e-92340
NC_015690:7785875:7823528782352878246251098Paenibacillus mucilaginosus KNP414 chromosome, complete genomeDNA sulfur modification protein DndB2e-89329
NC_007645:7136956:7161628716162871627281101Hahella chejuensis KCTC 2396, complete genomehypothetical protein6e-89327
NC_012673:2535427:2559580255958025606801101Exiguobacterium sp. AT1b, complete genomeDNA sulfur modification protein DndB1e-87323
NC_008209:761487:7745457745457756511107Roseobacter denitrificans OCh 114, complete genomehypothetical protein4e-77288
NC_017082:532000:5424735424735436811209Bradyrhizobium sp. S23321, complete genomehypothetical protein8e-22105
NC_015663:4767443:4781393478139347825141122Enterobacter aerogenes KCTC 2190 chromosome, complete genomebacteriophage protein3e-1892.8
NC_016935:7872425:7882415788241578836591245Paenibacillus mucilaginosus 3016 chromosome, complete genomeputative DGQHR domain protein2e-1377.4
NC_015690:1186545:1241148124114812423711224Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein4e-1375.9
NC_010572:4181403:4187704418770441889661263Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein4e-1066.2
NC_018866:2484500:2500654250065425019071254Dehalobacter sp. DCA chromosome, complete genomeDndB-like protein2e-0860.8
NC_013062:1298500:1317259131725913184911233Flavobacteriaceae bacterium 3519-10, complete genomehypothetical protein1e-0757.8
NC_016631:4113794:4160697416069741619651269Granulicella mallensis MP5ACTX8 chromosome, complete genomeDGQHR domain-containing protein7e-0652