Pre_GI: BLASTP Hits

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Query: NC_003155:3652587:3672836 Streptomyces avermitilis MA-4680, complete genome

Start: 3672836, End: 3674863, Length: 2028

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:170199:1867811867811887751995Thermomonospora curvata DSM 43183, complete genomeDNA sulfur modification protein DndD0637
NC_018681:867230:8790928790928808281737Nocardia brasiliensis ATCC 700358 chromosome, complete genomeDNA sulfur modification protein DndD2e-139496
NC_011768:5900500:5918612591861259205911980Desulfatibacillum alkenivorans AK-01, complete genomeDNA sulfur modification protein DndD1e-118427
NC_009483:2854500:2859230285923028612061977Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein1e-104381
NC_019940:2997439:3001463300146330034782016Thioflavicoccus mobilis 8321 chromosome, complete genomeDNA sulfur modification protein DndD3e-95349
NC_010397:1099312:1108474110847411104501977Mycobacterium abscessus chromosome Chromosome, complete sequenceConserved hypothetical protein (ATPase?)4e-90332
NC_016629:2784000:2808959280895928109291971Desulfovibrio africanus str. Walvis Bay chromosome, completeDNA sulfur modification protein DndD5e-89329
NC_018643:1080514:1104032110403211059991968Alpha proteobacterium HIMB5 chromosome, complete genomeDNA sulfur modification protein DndD3e-79296
NC_015968:511282:5222935222935242691977Enterobacter asburiae LF7a chromosome, complete genomeDNA sulfur modification protein DndD1e-76288
NC_012483:3672768:3679926367992636818931968Acidobacterium capsulatum ATCC 51196, complete genomeDNA sulfur modification protein DndD3e-74280
NC_011832:1399446:1408047140804714100802034Candidatus Methanosphaerula palustris E1-9c, complete genomeDNA sulfur modification protein DndD3e-62240
NC_018080:2288700:2320632232063223226171986Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein5e-60233
NC_007492:857428:8679388679388699201983Pseudomonas fluorescens PfO-1, complete genomehypothetical protein2e-58227
NC_008209:761487:7771087771087790601953Roseobacter denitrificans OCh 114, complete genomehypothetical protein2e-56221
NC_009712:334143:3510463510463530672022Candidatus Methanoregula boonei 6A8, complete genomeSMC protein-like protein1e-55218
NC_009901:2787978:2802433280243328044632031Shewanella pealeana ATCC 700345, complete genomeSMC domain protein2e-55218
NC_014012:2411096:2425201242520124272162016Shewanella violacea DSS12, complete genomehypothetical protein1e-54215
NC_007645:7136956:7164308716430871662991992Hahella chejuensis KCTC 2396, complete genomeATPase involved in DNA repair2e-35151
NC_012691:1743038:1753349175334917553642016Tolumonas auensis DSM 9187, complete genomeDNA sulfur modification protein DndD3e-30134
NC_020064:521500:5393485393485413482001Serratia marcescens FGI94, complete genomeDNA sulfur modification protein DndD4e-30133
NC_013282:551219:5693565693565713922037Cronobacter turicensis, complete genomehypothetical protein8e-30132
NC_013961:441719:4580904580904600902001Erwinia amylovora, complete genomeStructural maintenance of chromosomes protein 35e-29130
NC_013971:3296272:3311210331121033132102001Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA-binding protein5e-29130
CU928145:4950723:4959215495921549612632049Escherichia coli 55989 chromosome, complete genomeputative ATPase involved in DNA thiolation4e-29130
NC_011748:4950723:4959215495921549612632049Escherichia coli 55989, complete genomeputative ATPase involved in DNA thiolation4e-29130
NC_011415:4767892:4780428478042847824732046Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-29130
NC_009792:3245368:3257136325713632591331998Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-28128
NC_009436:522649:5357595357595377592001Enterobacter sp. 638, complete genomeSMC domain-containing protein2e-28127
NC_020210:2133996:2165075216507521670962022Geobacillus sp. GHH01, complete genomeDNA sulfur modification protein7e-27122
NC_020210:2133996:2169065216906521710802016Geobacillus sp. GHH01, complete genomeDNA sulfur modification protein4e-25117
NC_012673:2535427:2555894255589425579062013Exiguobacterium sp. AT1b, complete genomeDNA sulfur modification protein DndD1e-23112
NC_020304:752012:7618227618227638402019Desulfocapsa sulfexigens DSM 10523, complete genomeDNA sulfur modification protein DndD5e-23110
NC_015690:7785875:7820164782016478221461983Paenibacillus mucilaginosus KNP414 chromosome, complete genomeDNA repair ATPase1e-21105
NC_012673:2535427:2561237256123725632522016Exiguobacterium sp. AT1b, complete genomeDNA sulfur modification protein DndD2e-1997.8
NC_008782:3110744:3120378312037831224292052Acidovorax sp. JS42, complete genomehypothetical protein1e-1585.1
NC_012673:2535427:2542852254285225448702019Exiguobacterium sp. AT1b, complete genomeSMC domain protein3e-1377.4
NC_015510:4982255:4994147499414749962522106Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeSMC domain-containing protein6e-1376.6
NC_009615:2503465:253257325325732533556984Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-1171.6
NC_013062:1298500:1314231131423113163302100Flavobacteriaceae bacterium 3519-10, complete genomeATPase involved in DNA repair2e-1171.6
NC_009901:2787978:2808131280813128091951065Shewanella pealeana ATCC 700345, complete genomehypothetical protein2e-1068.2
NC_008212:1295061:1304491130449113065542064Haloquadratum walsbyi DSM 16790, complete genomechromosome segregation protein7e-1066.2
NC_011832:1399446:1417205141720514191961992Candidatus Methanosphaerula palustris E1-9c, complete genomehypothetical protein8e-1066.2
NC_008209:761487:7881357881357901862052Roseobacter denitrificans OCh 114, complete genomehypothetical protein1e-0965.5
NC_009483:2854500:2865874286587428679732100Geobacter uraniireducens Rf4 chromosome, complete genomeSMC domain-containing protein2e-0965.1
NC_012691:1743038:1761063176106317631052043Tolumonas auensis DSM 9187, complete genomeSMC domain protein9e-0962.8
NC_003155:3652587:3664680366468036667342055Streptomyces avermitilis MA-4680, complete genomehypothetical protein2e-0861.6
NC_011992:3375929:3397200339720033983871188Acidovorax ebreus TPSY, complete genomehypothetical protein2e-0861.2
NC_009615:2503465:252080725208072521766960Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein3e-0860.8
NC_021171:1661923:1670095167009516732323138Bacillus sp. 1NLA3E, complete genomeSbcC family exonuclease5e-0653.5
NC_008212:1295061:1295061129506112970642004Haloquadratum walsbyi DSM 16790, complete genomepredicted ATPase invovled in DNA repair7e-0653.1
NC_019904:2010999:2007979200797920110023024Echinicola vietnamensis DSM 17526 chromosome, complete genomeDNA repair ATPase8e-0652.8