Pre_GI: BLASTP Hits

Some Help

Query: NC_003155:2730469:2745431 Streptomyces avermitilis MA-4680, complete genome

Start: 2745431, End: 2748745, Length: 3315

Host Lineage: Streptomyces avermitilis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (ATCC 31267) was isolated and characterized in 1978 by R. Burg and colleagues from a soil sample collected in Shizuoka Prefecture, Japan. Antibiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This organism is a well known producer of the anti-parasitic agent avermectin which is widely used to rid livestock of worm and insect infestations and to protect large numbers of people from river blindness in sub-Saharan Africa.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014963:2972358:2990371299037129927942424Terriglobus saanensis SP1PR4 chromosome, complete genomealpha-1,2-mannosidase0785
NC_019673:8057941:8073847807384780771043258Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein0736
NC_014210:4188448:4210908421090842133432436Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,alpha-1,2-mannosidase0726
NC_008322:4000330:4008241400824140107602520Shewanella sp. MR-7, complete genomeputative alpha-1,2-mannosidase0656
NC_013947:4979000:4979919497991949826182700Stackebrandtia nassauensis DSM 44728 chromosome, complete genomealpha-1,2-mannosidase2e-125451
NC_019673:8057941:8071469807146980738502382Saccharothrix espanaensis DSM 44229 complete genomealpha-1,2-mannosidase9e-104379
NC_003902:3430051:3430051343005134323962346Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein5e-98360
NC_007086:1457531:1478417147841714807622346Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein5e-98360
NC_010688:1435694:1455276145527614576212346Xanthomonas campestris pv. campestris, complete genomeexported alpha-mannosidase1e-97358
NC_014006:2999500:3030100303010030324842385Sphingobium japonicum UT26S chromosome 1, complete genomeputative alpha-1,2-mannosidase1e-97358
NC_017267:3333036:3347959334795933503012343Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completehypothetical protein2e-92341
NC_007705:1828375:1828375182837518307172343Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomehypothetical protein2e-92341
NC_006834:1849492:1849492184949218518942403Xanthomonas oryzae pv. oryzae KACC10331, complete genomehypothetical protein2e-92341
NC_008322:4000330:4005859400585940082162358Shewanella sp. MR-7, complete genomeputative alpha-1,2-mannosidase4e-92340
NC_004663:5194400:5198998519899852012742277Bacteroides thetaiotaomicron VPI-5482, complete genomeputative alpha-1,2-mannosidase2e-84315
NC_004663:5194400:5202936520293652051672232Bacteroides thetaiotaomicron VPI-5482, complete genomeputative alpha-1,2-mannosidase5e-83310
NC_009614:769851:7858097858097880012193Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycoside hydrolase5e-79296
NC_008700:367949:3697393697393720602322Shewanella amazonensis SB2B, complete genomeputative alpha-1,2-mannosidase2e-78295
NC_013730:6707812:6731826673182667341502325Spirosoma linguale DSM 74, complete genomealpha-1,2-mannosidase3e-75284
NC_015164:2777008:2783763278376327860692307Bacteroides salanitronis DSM 18170 chromosome, complete genomealpha-1,2-mannosidase4e-75283
NC_015703:2104058:2118040211804021203222283Runella slithyformis DSM 19594 chromosome, complete genomealpha-1,2-mannosidase9e-74279
NC_015846:445000:4606274606274628762250Capnocytophaga canimorsus Cc5 chromosome, complete genomehypothetical protein7e-70266
NC_015321:4495394:4512855451285545158212967Fluviicola taffensis DSM 16823 chromosome, complete genomealpha-1,2-mannosidase3e-68261
NC_015311:2826000:2829688282968828319432256Prevotella denticola F0289 chromosome, complete genomeputative alpha-1,2-mannosidase5e-64246
NC_004663:5194400:5196633519663351989002268Bacteroides thetaiotaomicron VPI-5482, complete genomeputative alpha-1,2-mannosidase8e-64246
NC_004663:2184204:2192819219281921950742256Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein1e-62242
NC_016631:2997200:3013995301399530163132319Granulicella mallensis MP5ACTX8 chromosome, complete genomealpha-1,2-mannosidase2e-53211
NC_015953:5908467:5913070591307059169183849Streptomyces sp. SirexAA-E chromosome, complete genomealpha-1,2-mannosidase1e-51206
NC_019673:8161242:8183080818308081873424263Saccharothrix espanaensis DSM 44229 complete genomealpha-1,2-mannosidase8e-51202
NC_016114:1435436:1450332145033214541803849Streptomyces flavogriseus ATCC 33331 chromosome, complete genomealpha-1,2-mannosidase2e-50201
NC_003888:6568000:6580256658025665840623807Streptomyces coelicolor A3(2), complete genomesecreted ATP/GTP binding protein2e-48195
NC_014722:1552454:156064415606441561411768Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein6e-48193
NC_010572:1748668:1759669175966917635533885Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP/GTP-binding protein6e-47190
NC_016582:4073850:4085539408553940893633825Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative ATP/GTP-binding protein2e-46188
NC_003155:2730469:2741507274150727453523846Streptomyces avermitilis MA-4680, complete genomeATP/GTP-binding protein2e-45185
NC_009380:3734773:3743744374374437480274284Salinispora tropica CNB-440 chromosome, complete genomeputative alpha-1,2-mannosidase4e-44181
NC_021177:6662668:6667037666703766709093873Streptomyces fulvissimus DSM 40593, complete genomeATPGTP-binding protein4e-39164
NC_013929:2375613:2388730238873023925423813Streptomyces scabiei 87.22 chromosome, complete genomemannosidase2e-35151
NC_013171:1731491:1752850175285017549552106Anaerococcus prevotii DSM 20548, complete genomealpha-1,2-mannosidase1e-31139
NC_014722:1552454:156218215621821562913732Burkholderia rhizoxinica HKI 454, complete genomealpha-1,2-mannosidase5e-30134
NC_013521:1619394:1633361163336116364653105Sanguibacter keddieii DSM 10542, complete genomealpha-1,2-mannosidase, putative2e-29131
NC_013853:2048867:2068633206863320707172085Streptococcus mitis B6, complete genomesugar hydrolase1e-26122
NC_008533:1935500:1944416194441619465002085Streptococcus pneumoniae D39, complete genomealpha-1,2-mannosidase, putative4e-26120
NC_003098:1925783:1936914193691419389982085Streptococcus pneumoniae R6, complete genomehypothetical protein4e-26120
NC_012468:2069238:2080081208008120821652085Streptococcus pneumoniae 70585, complete genomeantigen, cell wall surface anchor family1e-25119
NC_010582:2091138:2104321210432121064052085Streptococcus pneumoniae CGSP14, complete genomeantigen, cell wall surface anchor family5e-25117
NC_011900:2107133:2119449211944921215332085Streptococcus pneumoniae ATCC 700669, complete genomealpha-1,2-mannosidase5e-25117
NC_012466:2008000:2018846201884620209302085Streptococcus pneumoniae JJA, complete genomeantigen, cell wall surface anchor family1e-24116
NC_012467:1997484:2010497201049720125812085Streptococcus pneumoniae P1031, complete genomeantigen, cell wall surface anchor family2e-24115
NC_014498:2127000:2135803213580321378872085Streptococcus pneumoniae 670-6B chromosome, complete genomeantigen, cell wall surface anchor family2e-24115
NC_016582:3563156:356409735640973564996900Streptomyces bingchenggensis BCW-1 chromosome, complete genomeBeta-glucosidase3e-1998.2