Pre_GI: BLASTP Hits

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Query: NC_003143:2804500:2817539 Yersinia pestis CO92, complete genome

Start: 2817539, End: 2818426, Length: 888

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a recent Orientalis subtype isolated in the USA from a patient who died of pneumonic plague after acquiring the disease from an infected cat. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:2941938:294401029440102944897888Yersinia pestis A1122 chromosome, complete genomethreonine and homoserine efflux system4e-134477
NC_010159:1818500:183158318315831832464882Yersinia pestis Angola, complete genomeintegral membrane protein4e-134477
NC_017154:2804000:281701828170182817899882Yersinia pestis D106004 chromosome, complete genomeintegral membrane protein4e-134477
NC_017265:1571305:157482515748251575712888Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,threonine and homoserine efflux system4e-134477
NC_004088:1851500:185374418537441854631888Yersinia pestis KIM, complete genometransmembrane subunit4e-134477
NC_010634:2894631:292871929287192929606888Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein4e-134477
NC_006155:2979500:301077730107773011664888Yersinia pseudotuberculosis IP 32953, complete genomeputative DMT superfamily metabolite efflux protein4e-134477
NC_008149:2366500:237932323793232380210888Yersinia pestis Nepal516, complete genomemembrane protein4e-134477
NC_005810:2549680:258359325835932584480888Yersinia pestis biovar Microtus str. 91001, complete genomethreonine and homoserine efflux system4e-134477
NC_009381:2138625:216974721697472170634888Yersinia pestis Pestoides F chromosome, complete genomethreonine and homoserine efflux system4e-134477
NC_009708:1735903:174142617414261742313888Yersinia pseudotuberculosis IP 31758 chromosome, complete genomethreonine and homoserine efflux system4e-134477
NC_014029:2756500:276986227698622770749888Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-134477
NC_017160:2787637:279115627911562792043888Yersinia pestis D182038 chromosome, complete genomehypothetical protein4e-134477
NC_012917:1840172:184017218401721841059888Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-99362
NC_013421:3117639:313558331355833136464882Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF6 transmembrane4e-98358
NC_013364:928486:929288929288930175888Escherichia coli O111:H- str. 11128, complete genomethreonine and homoserine efflux system protein RhtA2e-93342
NC_013353:922937:923739923739924626888Escherichia coli O103:H2 str. 12009, complete genomethreonine and homoserine efflux system protein RhtA2e-93342
AP010958:922937:923739923739924626888Escherichia coli O103:H2 str. 12009 DNA, complete genomethreonine and homoserine efflux system protein RhtA2e-93342
NC_015061:1481500:149917414991741500160987Rahnella sp. Y9602 chromosome, complete genomehypothetical protein1e-71269
NC_017047:1434500:145211714521171453103987Rahnella aquatilis HX2 chromosome, complete genomethreonine and homoserine efflux system1e-71269
NC_014013:112008:115305115305116192888Sphingobium japonicum UT26S chromosome 2, complete genomeEamA family transporter2e-58226
NC_015563:4414854:443042444304244431326903Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein1e-49197
NC_011892:306437:314029314029314946918Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeprotein of unknown function DUF6 transmembrane2e-46186
NC_014215:1243125:125724512572451258120876Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,Permeases of the drug/metabolite transporter (DMT) superfamily2e-23110
NC_015957:5310000:532314353231435323991849Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein2e-21103
NC_009142:4046376:4050099405009940511361038Saccharopolyspora erythraea NRRL 2338, complete genometransporter, EamA family1e-20100
NC_015381:1318818:133929313392931340189897Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-1894
NC_014830:1871135:189721918972191898109891Intrasporangium calvum DSM 43043 chromosome, complete genomeprotein of unknown function DUF6 transmembrane6e-1891.7
NC_010572:188500:207370207370208281912Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative integral membrane protein2e-1790.1
NC_009480:703102:720800720800721792993Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative permease, DMT family6e-1685.1
NC_009953:2727669:275155027515502752416867Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein8e-1477.8
NC_007802:1991211:201389220138922014761870Jannaschia sp. CCS1, complete genomehypothetical protein1e-1273.9
NC_007802:1484641:149018414901841491113930Jannaschia sp. CCS1, complete genomehypothetical protein1e-1273.9
NC_013947:1956923:196428119642811965153873Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein2e-0963.5
NC_009380:2548878:2569223256922325702331011Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein5e-0962
NC_014218:253558:254783254783255646864Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeprotein of unknown function DUF6 transmembrane6e-0961.6