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Query: NC_003064:22535 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 22535, End: 48309, Length: 25775

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003306:22228222284809925872Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence050970BLASTN svgBLASTP svg
NC_003063:30496230496233428329322Agrobacterium tumefaciens str. C58 chromosome linear, complete01334BLASTN svgBLASTP svg
NC_003305:17439391743939177259928661Agrobacterium tumefaciens str. C58 chromosome linear, complete01334BLASTN svgBLASTP svg
NC_003063:20593112059311208899929689Agrobacterium tumefaciens str. C58 chromosome linear, complete01306BLASTN svgBLASTP svg
NC_011987:36299736299739049927503Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence1e-36163BLASTN svgBLASTP svg
NC_004463:92514092514094989124752Bradyrhizobium japonicum USDA 110, complete genome5e-0867.9BLASTN svgBLASTP svg