Pre_GI: BLASTP Hits

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Query: NC_003064:22535:40802 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 40802, End: 41704, Length: 903

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003306:22228:404954049541397903Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein5e-176616
NC_007494:1:122131221313130918Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencehypothetical protein4e-78291
NC_009050:567209:587986587986588903918Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRepB plasmid partition7e-78290
NC_008826:170609:169734169734170612879Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceParB-like nuclease1e-75283
NC_008825:1258500:128726912872691288147879Methylibium petroleiphilum PM1, complete genomeParB-like nuclease1e-75283
NC_008358:2638245:267571126757112676625915Hyphomonas neptunium ATCC 15444, complete genomeParB family protein2e-75282
NC_004463:925140:946525946525947415891Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein7e-73274
NC_019973:6102442:611517261151726116062891Mesorhizobium australicum WSM2073, complete genomeputative transcriptional regulator1e-71270
NC_008825:3161146:317183031718303172708879Methylibium petroleiphilum PM1, complete genomehypothetical protein4e-71268
NC_011992:3375929:339160133916013392479879Acidovorax ebreus TPSY, complete genomeRepB plasmid partition6e-69261
NC_007794:561623:571140571140572099960Novosphingobium aromaticivorans DSM 12444, complete genomeRepB plasmid partition1e-64246
NC_012660:5793200:582430658243065825211906Pseudomonas fluorescens SBW25 chromosome, complete genomeputative plasmid partitioning protein1e-61236
NC_004578:20738:408844088441852969Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein9e-59227
NC_010814:1441327:144552114455211446414894Geobacter lovleyi SZ, complete genomeRepB plasmid partition2e-57223
NC_020209:4768500:479527747952774796248972Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-57222
NC_005773:106000:113614113614114579966Pseudomonas syringae pv. phaseolicola 1448A, complete genomeParB-like nuclease2e-52206
NC_015381:1:613661367035900Burkholderia gladioli BSR3 chromosome 1, complete sequenceParB-like nuclease1e-51203
NC_014752:834616:872541872541873440900Neisseria lactamica ST-640, complete genomehypothetical protein3e-49195
NC_016514:3573400:358453535845353585431897Enterobacter cloacae EcWSU1 chromosome, complete genomerepB Plasmid Partition1e-46186
NC_009801:2898426:291040629104062911302897Escherichia coli E24377A, complete genomerepB plasmid partitioning protein9e-46184
NC_009436:3117661:312954731295473130440894Enterobacter sp. 638, complete genomeRepB plasmid partition5e-46184
NC_012967:2669182:268136826813682682264897Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein7e-45181
NC_012947:1106000:111253311125331113429897Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRepB plasmid partition7e-45181
NC_009708:915814:928475928475929359885Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRepB plasmid partitioning protein1e-39163
NC_014562:2563466:257431625743162575188873Pantoea vagans C9-1 chromosome, complete genomeplasmid partitioning protein1e-38160
NC_011283:4438500:447149244714924472091600Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-30132
NC_015675:3046852:304685230468523047679828Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRepB plasmid partition4e-1478.6