Pre_GI: BLASTP Hits

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Query: NC_003063:2059311:2065160 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2065160, End: 2065423, Length: 264

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1:933393339596264Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-42171
NC_009925:1003000:101272610127261012944219Acaryochloris marina MBIC11017, complete genometranscriptional regulator, AbrB family1e-1065.5
NC_011901:3363500:337092033709203371168249Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeAbrB family transcriptional regulator5e-0959.7
NC_009483:3727490:374247937424793742709231Geobacter uraniireducens Rf4 chromosome, complete genomeAbrB family transcriptional regulator1e-0652