Pre_GI: BLASTP Hits

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Query: NC_003063:2059311:2063876 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2063876, End: 2064193, Length: 318

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1:105811058110880300Agrobacterium tumefaciens str. C58 chromosome linear, completephosphoglyceromutase4e-52202
NC_013192:232778:268893268893269537645Leptotrichia buccalis DSM 1135, complete genomePhosphoglycerate mutase3e-0960.5
NC_004557:2777291:278442427844242785065642Clostridium tetani E88, complete genomephosphoglycerate mutase4e-0856.6
NC_013517:1055854:111152311115231112161639Sebaldella termitidis ATCC 33386, complete genomePhosphoglycerate mutase5e-0856.6
NC_008321:3189974:319696931969693197559591Shewanella sp. MR-4, complete genomePhosphoglycerate mutase1e-0755.1
NC_008261:64678:932619326193884624Clostridium perfringens ATCC 13124, complete genomephosphoglycerate mutase family protein1e-0755.1
NC_015635:3860570:389086438908643891490627Microlunatus phosphovorus NM-1, complete genomephosphoglycerate mutase family protein3e-0753.9
NC_002488:1775629:179165817916581792302645Xylella fastidiosa 9a5c, complete genomephosphoglycerate mutase3e-0753.5
NC_005140:1820970:182468718246871825301615Vibrio vulnificus YJ016 chromosome II, complete sequencefructose-2;6-bisphosphatase4e-0753.5
NC_010513:1162232:116669111666911167335645Xylella fastidiosa M12 chromosome, complete genomephosphoglycerate mutase5e-0753.1
NC_020304:2107979:210915121091512109813663Desulfocapsa sulfexigens DSM 10523, complete genomefructose-2,6-bisphosphatase4e-0753.1
NC_015437:1038476:104379310437931044422630Selenomonas sputigena ATCC 35185 chromosome, complete genomePhosphoglycerate mutase9e-0752.4
NC_011837:165913:180513180513181148636Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-0652
NC_009706:165913:180513180513181148636Clostridium kluyveri DSM 555 chromosome, complete genomeprotein CobC11e-0652
NC_012803:1094679:109748710974871098152666Micrococcus luteus NCTC 2665, complete genomefructose-2,6-bisphosphatase2e-0651.6
NC_006677:1052031:105855210585521059211660Gluconobacter oxydans 621H, complete genomeProbable phosphoglycerate mutase 22e-0651.2
NC_014304:77715:927669276693467702Erwinia billingiae Eb661 plasmid pEB102, complete sequence2,3-bisphosphoglycerate-dependent phosphoglycerate mutase3e-0650.8
NC_012779:610509:613554613554614201648Edwardsiella ictaluri 93-146, complete genomeputative phosphoglycerate mutase gpmb (pgam)3e-0650.8
NC_011832:619874:632141632141632890750Candidatus Methanosphaerula palustris E1-9c, complete genomephosphoglycerate mutase 1 family6e-0649.7
NC_012814:1856632:185873718587371859405669Bifidobacterium animalis subsp. lactis Bl-04, complete genomeBroad specificity phosphatase7e-0649.3