Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1372792 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1372792, End: 1373439, Length: 648

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:693810:701389701389701964576Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-99362
NC_014840:205723:229303229303229839537Pantoea sp. At-9b plasmid pPAT9B03, complete sequenceGCN5-related N-acetyltransferase3e-0858.5
NC_014915:308056:324823324823325410588Geobacillus sp. Y412MC52 chromosome, complete genomeGCN5-related N-acetyltransferase7e-0857.4
NC_013411:1168049:118481611848161185403588Geobacillus sp. Y412MC61, complete genomeGCN5-related N-acetyltransferase7e-0857.4
NC_003888:3111998:313010531301053130731627Streptomyces coelicolor A3(2), complete genomeacetyltransferase1e-0653.1
NC_006932:1795500:179644917964491797099651Brucella abortus biovar 1 str. 9-941 chromosome I, completeacetyltransferase, GNAT family3e-0652
NC_007618:1792500:179357717935771794227651Brucella melitensis biovar Abortus 2308 chromosome I, completeGCN5-related N-acetyltransferase3e-0652
NC_015857:1809500:181033818103381810988651Brucella pinnipedialis B2/94 chromosome chromosome 1, completeGNAT family acetyltransferase3e-0652
NC_010742:1794000:179473817947381795388651Brucella abortus S19 chromosome 1, complete sequenceGCN5-related N-acetyltransferase3e-0652
NC_016935:4233223:427096342709634271526564Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein4e-0651.6
NC_010167:1287000:128769612876961288346651Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein9e-0650.4
NC_004310:1777721:177957717795771780227651Brucella suis 1330 chromosome I, complete sequenceacetyltransferase, GNAT family9e-0650.4
NC_010103:1777000:177775217777521778402651Brucella canis ATCC 23365 chromosome I, complete sequenceacetyltransferase, GNAT family9e-0650.4