Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1370875 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1370875, End: 1371765, Length: 891

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:693810:702991702991703881891Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-171601
NC_018679:2541986:255706225570622557916855Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completedienelactone hydrolase family protein4e-21102
NC_008553:1267580:1280818128081812820891272Methanosaeta thermophila PT, complete genomeacyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase6e-1684.7
NC_014640:4031336:4033990403399040352971308Achromobacter xylosoxidans A8 chromosome, complete genomeBAAT/acyl-CoA thioester hydrolase family protein 18e-1581.3
NC_014829:1526401:1534951153495115362281278Bacillus cellulosilyticus DSM 2522 chromosome, complete genomealpha/beta fold family hydrolase4e-1272.4
NC_012982:2415237:242353424235342424517984Hirschia baltica ATCC 49814, complete genomeBAAT/Acyl-CoA thioester hydrolase8e-1271.2
NC_009142:1282589:1304373130437313057311359Saccharopolyspora erythraea NRRL 2338, complete genomeputative acyl coenzyme A thioester hydrolase1e-1170.9
NC_008536:3988520:4004473400447340057141242Solibacter usitatus Ellin6076, complete genomePalmitoyl-CoA hydrolase1e-0964.3
NC_002967:2194829:220318922031892204124936Treponema denticola ATCC 35405, complete genomehypothetical protein6e-0858.2