Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1368619 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1368619, End: 1369191, Length: 573

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:693810:705643705643706137495Agrobacterium tumefaciens str. C58 chromosome linear, completeantioxidant enzyme5e-93339
NC_009952:749426:753664753664754239576Dinoroseobacter shibae DFL 12, complete genomeredoxin domain protein4e-50197
NC_015434:5411:199961999620904909Verrucosispora maris AB-18-032 chromosome, complete genomethiol-specific antioxidant-like protein/peroxidoxin BcpB3e-32138
NC_002578:377783:377783377783378244462Thermoplasma acidophilum DSM 1728, complete genomethiol-specific antioxidant related protein3e-1168.2
NC_014733:1073540:107856210785621079128567Methylovorus sp. MP688 chromosome, complete genomealkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen1e-0962.8
NC_013595:1851226:186611518661151866579465Streptosporangium roseum DSM 43021, complete genomethioredoxin-dependent thiol peroxidase2e-0962.4
NC_008820:1659612:166232616623261662787462Prochlorococcus marinus str. MIT 9303, complete genomeputative bacterioferritin comigratory protein2e-0962
NC_014831:388007:395127395127395588462Thermaerobacter marianensis DSM 12885 chromosome, complete genomePeroxiredoxin3e-0961.6
NC_007181:2054663:207013720701372070604468Sulfolobus acidocaldarius DSM 639, complete genomeuniversally conserved protein3e-0961.6
NC_004113:1234048:123984612398461240283438Thermosynechococcus elongatus BP-1, complete genomebacterioferritin comigratory protein4e-0960.8
NC_009925:5479613:549503054950305495467438Acaryochloris marina MBIC11017, complete genomebacterioferritin comigratory protein1e-0859.7
NC_007947:1229807:123509912350991235644546Methylobacillus flagellatus KT, complete genomealkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen2e-0858.9
NC_012968:1352463:135362313536231354162540Methylotenera mobilis JLW8, complete genomealkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen4e-0857.8
NC_011567:388358:397547397547398008462Anoxybacillus flavithermus WK1, complete genomePeroxiredoxin4e-0857.8
NC_000854:50407:599105991060401492Aeropyrum pernix K1, complete genomethiol peroxidase8e-0856.6
NC_009925:1109770:112848511284851128955471Acaryochloris marina MBIC11017, complete genomebacterioferritin comigratory protein1e-0756.2
NC_007604:1875268:187526818752681875741474Synechococcus elongatus PCC 7942, complete genomebacterioferritin comigratory protein2e-0755.8
NC_006576:2423250:244131024413102441783474Synechococcus elongatus PCC 6301, complete genomebacterioferritin comigratory protein2e-0755.8
NC_019974:2421422:242500224250022425457456Natronococcus occultus SP4, complete genomePeroxiredoxin2e-0652.4