Pre_GI: BLASTP Hits

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Query: NC_003063:1128370:1154366 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1154366, End: 1155394, Length: 1029

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015376:2010009:2017581201758120186091029Burkholderia gladioli BSR3 chromosome chromosome 2, complete5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase0662
NC_007974:1607500:1614132161413216151601029Ralstonia metallidurans CH34 chromosome 2, complete sequenceMethionine synthase, vitamin-B12 independent0660
NC_014500:2688095:2694276269427626954211146Dickeya dadantii 3937 chromosome, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase0660
NC_014640:2693060:2698665269866526996841020Achromobacter xylosoxidans A8 chromosome, complete genomemethyltransferase0649
NC_013592:2059138:2087002208700220880331032Dickeya dadantii Ech586, complete genomeMethionine synthase vitamin-B12 independent0649
NC_015968:1165829:1170218117021811712461029Enterobacter asburiae LF7a chromosome, complete genomemethionine synthase vitamin-B12 independent0645
NC_020064:1409596:1451607145160714526291023Serratia marcescens FGI94, complete genomemethionine synthase II (cobalamin-independent)0644
NC_013956:1810026:1811035181103518120661032Pantoea ananatis LMG 20103 chromosome, complete genomeMetE0641
NC_007509:971500:9754629754629764811020Burkholderia sp. 383 chromosome 3, complete sequence5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase0639
NC_006677:2402282:2419688241968824207161029Gluconobacter oxydans 621H, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase0638
NC_007005:3414579:3426758342675834277891032Pseudomonas syringae pv. syringae B728a, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase0635
NC_015566:3417951:3447595344759534486261032Serratia sp. AS12 chromosome, complete genome2-hydroxypropyl-CoM lyase0634
NC_016027:1357659:1373087137308713741151029Gluconacetobacter xylinus NBRC 3288, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase2e-180631
NC_014306:3006028:3033496303349630345241029Erwinia billingiae Eb661, complete genomeMethionine synthase2e-180631
NC_014258:127500:1436811436811447121032Pantoea vagans C9-1 plasmid pPag3, complete sequence5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase1e-177622
NC_012803:2195808:2242687224268722437181032Micrococcus luteus NCTC 2665, complete genomemethionine synthase (B12-independent)1e-149529
NC_013741:27353:367693676937734966Archaeoglobus profundus DSM 5631, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase2e-38159
NC_008697:118859:1342681342681353801113Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceMethionine synthase, vitamin-B12 independent2e-34146
NC_016604:2944555:2952134295213429532401107Mycobacterium rhodesiae NBB3 chromosome, complete genomemethionine synthase II (cobalamin-independent)7e-34144
NC_014374:318528:318528318528319520993Acidilobus saccharovorans 345-15 chromosome, complete genomeProbable methylcobalamin:homocysteine methyltransferase2e-32139
NC_008818:702452:7139797139797149831005Hyperthermus butylicus DSM 5456, complete genomeMethionine synthase II (cobalamin-independent)9e-31134
NC_014297:1574238:1596395159639515974561062Halalkalicoccus jeotgali B3 chromosome, complete genomemethionine synthase8e-31134
NC_014098:2735500:2735643273564327367071065Bacillus tusciae DSM 2912 chromosome, complete genomeMethionine synthase vitamin-B12 independent2e-28127
NC_017256:30192:3124631246335222277Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase7e-26118
NC_007974:1007834:1025715102571510281262412Ralstonia metallidurans CH34 chromosome 2, complete sequence5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase2e-25116
NC_011770:3735162:3759553375955337618532301Pseudomonas aeruginosa LESB58, complete genome5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase5e-24112
NC_018080:3448392:3464473346447334667732301Pseudomonas aeruginosa DK2 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase5e-24112
NC_008463:3503576:3523452352345235257522301Pseudomonas aeruginosa UCBPP-PA14, complete genome5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase5e-24112
NC_004545:15650:3218632186344562271Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase1e-23110
NC_015224:279037:3013923013923036682277Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase1e-23110
NC_011834:31206:3120631206334822277Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase4e-23109
NC_017252:31215:3121531215334912277Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase4e-23109
NC_017255:31211:3121131211334872277Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase4e-23109
NC_002528:31191:3119131191334672277Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase3e-23109
NC_011833:31192:3119231192334682277Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase3e-23109
NC_017253:31192:3119231192334682277Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase3e-23109
NC_017254:31206:3120631206334822277Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase3e-23109
NC_008513:13484:1732817328196102283Buchnera aphidicola str. Cc (Cinara cedri), complete genome5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase2e-23109
NC_012912:4428111:4452660445266044549302271Dickeya zeae Ech1591, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase1e-22107
NC_014844:2828370:2830711283071128329962286Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase2e-22107
NC_008346:1047500:1060394106039410626702277Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase2e-22106
NC_014394:942015:9558289558289581042277Gallionella capsiferriformans ES-2 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase6e-22105
NC_004061:31500:3153231532338052274Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase3e-22105
NC_004578:4708220:4708220470822047105202301Pseudomonas syringae pv. tomato str. DC3000, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase1e-21103
NC_015499:1403447:1420404142040414226682265Thermodesulfobium narugense DSM 14796 chromosome, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteinemethyltransferase2e-21103
NC_017259:25400:3060430604328862283Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase2e-21103
NC_011901:625712:6501056501056524022298Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase5e-21102
NC_007520:2391675:2406957240695724093052349Thiomicrospira crunogena XCL-2, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase5e-21102
NC_013421:4714478:4777762477776247800262265Pectobacterium wasabiae WPP163, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase3e-21102
NC_019892:1113114:1113114111311411154352322Singulisphaera acidiphila DSM 18658 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase6e-21101
NC_018868:2935580:2955663295566329579962334Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase7e-21101
NC_007350:2460134:2482517248251724847602244Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase2e-20100
NC_009921:4186000:4198544419854442008442301Frankia sp. EAN1pec, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase3e-2099.8
NC_006270:1415001:1415001141500114172892289Bacillus licheniformis ATCC 14580, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase7e-2098.2
NC_006322:1415863:1415863141586314181512289Bacillus licheniformis ATCC 14580, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase7e-2098.2
NC_015602:1949610:1967819196781919701042286Lactobacillus kefiranofaciens ZW3 chromosome, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase2e-1996.7
NC_018528:1932000:1932939193293919352242286Lactobacillus helveticus R0052 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase2e-1996.7
NC_013410:1651000:1671490167149016737572268Fibrobacter succinogenes subsp. succinogenes S85 chromosome,5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase8e-1994.7
NC_010080:1885677:1885677188567718879622286Lactobacillus helveticus DPC 4571, complete genomeMethionine synthase II2e-1893.6
NC_008529:1133665:1141475114147511437602286Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeMethionine synthase II (cobalamin-independent)3e-1892.8
NC_014497:180000:2039552039552062312277Candidatus Zinderia insecticola CARI chromosome, complete genomeputative cobalamin-independent homocysteine transmethylase5e-1892.4
NC_014616:1065500:1081703108170310840092307Bifidobacterium bifidum S17 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase7e-1891.7
NC_020409:1407857:1424897142489714271672271Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase1e-1790.9
NC_008942:27436:386653866539558894Methanocorpusculum labreanum Z, complete genomehypothetical protein1e-1790.5
NC_015662:15641:1879518795209032109Buchnera aphidicola (Cinara tujafilina) chromosome, complete5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase2e-1790.1
NC_015690:4469775:4547439454743945486321194Paenibacillus mucilaginosus KNP414 chromosome, complete genome5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase2e-1790.1
NC_015216:2213427:222905622290562230030975Methanobacterium sp. AL-21 chromosome, complete genomemethionine synthase vitamin-B12 independent2e-1790.1
NC_007168:2631535:2641966264196626442152250Staphylococcus haemolyticus JCSC1435, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase2e-1789.7
NC_004307:579729:5797295797295820322304Bifidobacterium longum NCC2705, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase4e-1789
NC_015067:998500:1017411101741110197142304Bifidobacterium longum subsp. longum JCM 1217, complete genome5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase4e-1789
NC_015052:1094825:1118431111843111207312301Bifidobacterium longum subsp. infantis 157F, complete genome5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase4e-1789
NC_016935:4233223:4303743430374343049361194Paenibacillus mucilaginosus 3016 chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase6e-1788.6
NC_009714:1084000:1105998110599811071641167Campylobacter hominis ATCC BAA-381, complete genome5-methyltetrahydropteroyltriglutamate-- homocystei ne methyltransferase3e-1686.3
NC_004463:2158116:2233096223309622354412346Bradyrhizobium japonicum USDA 110, complete genome5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase4e-1685.5
NC_017249:7993713:8044069804406980464142346Bradyrhizobium japonicum USDA 6, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase4e-1685.5
NC_014657:2283176:2285595228559522878682274Caldicellulosiruptor owensensis OL chromosome, complete genome5- methyltetrahydropteroyltriglutamate/homocysteine s-methyltransferase1e-1584
NC_015976:814922:8321858321858332941110Sphingobium sp. SYK-6, complete genomehypothetical protein2e-1376.6
NC_015311:1101761:1117164111716411182851122Prevotella denticola F0289 chromosome, complete genomemethionine synthase, vitamin-B12 independent2e-0963.5
NC_006270:4014000:4014426401442640155561131Bacillus licheniformis ATCC 14580, complete genomemethionine synthase3e-0963.2
NC_013741:27353:377313773138678948Archaeoglobus profundus DSM 5631, complete genomeCobalamin-independent synthase MetE domain protein1e-0757.8
NC_012880:3827390:3847281384728138484651185Dickeya dadantii Ech703, complete genomeMethionine synthase vitamin-B12 independent2e-0757
NC_009342:2211000:2211000221100022122051206Corynebacterium glutamicum R chromosome, complete genomehypothetical protein4e-0756.2
NC_003450:2244862:2247004224700422482091206Corynebacterium glutamicum ATCC 13032, complete genomemethionine synthase II4e-0756.2
NC_006958:2214893:2217035221703522182521218Corynebacterium glutamicum ATCC 13032, complete genomesimilar to methionine synthase II (cobalamin-independent)4e-0756.2