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Query: NC_003063:1128370:1153357 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1153357, End: 1154340, Length: 984

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007509:971500:976518976518977501984Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein4e-154544
NC_014640:2693060:269972126997212700704984Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein1e-153542
NC_014500:2688095:269337826933782694361984Dickeya dadantii 3937 chromosome, complete genomehypothetical protein1e-151536
NC_015376:2010009:201656920165692017552984Burkholderia gladioli BSR3 chromosome chromosome 2, completehypothetical protein4e-151534
NC_007974:1607500:161519016151901616179990Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein4e-149527
NC_013956:1810026:181002618100261811009984Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein6e-146516
NC_015563:4629436:462943646294364630419984Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein7e-146516
NC_015566:3417951:344659134465913447568978Serratia sp. AS12 chromosome, complete genomehypothetical protein1e-145515
NC_014306:3006028:303248930324893033466978Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein2e-143508
NC_015968:1165829:117127411712741172257984Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein2e-143508
NC_007005:3414579:342575134257513426734984Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein4e-143507
NC_013592:2059138:208806120880612089038978Dickeya dadantii Ech586, complete genomeDomain of unknown function DUF18527e-141500
NC_006677:2402282:241867724186772419660984Gluconobacter oxydans 621H, complete genomehypothetical protein1e-138492
NC_020064:1409596:145265914526591453636978Serratia marcescens FGI94, complete genomeprotein of unknown function (DUF1852)5e-137487
NC_016027:1357659:137414213741421375125984Gluconacetobacter xylinus NBRC 3288, complete genomehypothetical protein1e-132473
NC_012803:2195808:2243715224371522447611047Micrococcus luteus NCTC 2665, complete genomeDomain of unknown function (DUF1852)2e-107388
NC_014258:127500:142672142672143373702Pantoea vagans C9-1 plasmid pPag3, complete sequencehypothetical protein3e-81301
NC_014258:127500:143423143423143653231Pantoea vagans C9-1 plasmid pPag3, complete sequencehypothetical protein6e-27121