Pre_GI: BLASTP Hits

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Query: NC_003063:1128370:1151923 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1151923, End: 1152753, Length: 831

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:922357:922357922357922833477Agrobacterium tumefaciens str. C58 chromosome linear, completeacyl-CoA hydrolase3e-87322
NC_015947:223184:231761231761232162402Burkholderia sp. JV3 chromosome, complete genomethioesterase superfamily protein2e-25116
NC_014500:1862000:191289819128981913293396Dickeya dadantii 3937 chromosome, complete genomecytosolic long-chain acyl-CoA thioester hydrolase family protein1e-21103
NC_012912:2901021:290775029077502908145396Dickeya zeae Ech1591, complete genomethioesterase superfamily protein2e-21103
NC_012880:2871480:287555028755502875945396Dickeya dadantii Ech703, complete genomethioesterase superfamily protein8e-2097.8
NC_012108:2037429:204116920411692041675507Desulfobacterium autotrophicum HRM2, complete genomeAcyl-CoA thioester hydrolase3e-1685.9
NC_020134:301500:315905315905316402498Clostridium stercorarium subsp. stercorarium DSM 8532, completethioesterase superfamily protein YciA4e-1685.1
NC_017387:1110412:112629611262961126811516Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeacyl-CoA hydrolase8e-1580.9
NC_017506:1507943:151336015133601513839480Marinobacter adhaerens HP15 chromosome, complete genomethioesterase superfamily protein1e-1480.5
NC_011146:3537546:355657935565793557013435Geobacter bemidjiensis Bem, complete genomethioesterase superfamily protein1e-1377
NC_011666:2259447:226584422658442266332489Methylocella silvestris BL2, complete genomethioesterase superfamily protein2e-1376.3
NC_002620:936869:954999954999955478480Chlamydia muridarum Nigg, complete genomecytosolic acyl-CoA thioester hydrolase family protein9e-1374.3
NC_010280:899974:921369921369921851483Chlamydia trachomatis L2b/UCH-1/proctitis, complete genomeacyl-CoA hydrolase8e-1374.3
NC_007429:585774:605453605453605935483Chlamydia trachomatis A/HAR-13, complete genomeacyl-CoA hydrolase8e-1374.3
NC_000117:581987:602745602745603227483Chlamydia trachomatis D/UW-3/CX, complete genomeAcyl-CoA Thioester Hydrolase8e-1374.3
NC_010287:899945:921341921341921823483Chlamydia trachomatis 434/Bu, complete genomeacyl-CoA hydrolase8e-1374.3
NC_015744:900000:920810920810921292483Chlamydia trachomatis L2c chromosome, complete genomethioesterase superfamily protein8e-1374.3
NC_012686:586714:605345605345605827483Chlamydia trachomatis B/Jali20/OT chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_012687:586657:605283605283605765483Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_016798:586689:605315605315605797483Chlamydia trachomatis A2497, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017429:583327:603006603006603488483Chlamydia trachomatis G/9768 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017440:583392:603071603071603553483Chlamydia trachomatis G/11074 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017439:583513:603176603176603658483Chlamydia trachomatis E/150 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017437:586692:605318605318605800483Chlamydia trachomatis A2497 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017436:581986:602744602744603226483Chlamydia trachomatis D-LC chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017434:581988:602746602746603228483Chlamydia trachomatis D-EC chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017432:583328:603007603007603489483Chlamydia trachomatis G/9301 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017431:583529:603192603192603674483Chlamydia trachomatis E/11023 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_017430:582000:602562602562603044483Chlamydia trachomatis G/11222 chromosome, complete genomeacyl-CoA hydrolase8e-1374.3
NC_007795:1922000:196837919683791968909531Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein1e-1170.5
NC_015948:1131628:113373811337381134181444Haloarcula hispanica ATCC 33960 chromosome chromosome I, completeacyl-CoA thioester hydrolase2e-1169.3
NC_007298:3764048:376943237694323769920489Dechloromonas aromatica RCB, complete genomeThioesterase superfamily3e-1168.9
NC_007925:3911323:391522139152213915640420Rhodopseudomonas palustris BisB18, complete genomethioesterase superfamily2e-0963.5
NC_010170:1551923:156562915656291566108480Bordetella petrii, complete genomePutative acyl-CoA thioester hydrolase2e-0963.2
NC_008048:2838769:285587228558722856264393Sphingopyxis alaskensis RB2256, complete genomethioesterase superfamily3e-0962.4
NC_008767:877904:899185899185899631447Neisseria meningitidis FAM18, complete genomeputative acyl-CoA hydrolase5e-0962
NC_017513:887344:908279908279908725447Neisseria meningitidis G2136 chromosome, complete genomethioesterase family protein5e-0962
NC_011035:566980:568429568429568998570Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative acyl-CoA hydrolase7e-0961.2
NC_002946:1020175:103678910367891037235447Neisseria gonorrhoeae FA 1090, complete genomeputative acyl-CoA hydrolase8e-0961.2
NC_017511:543583:546311546311546880570Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative acyl-CoA hydrolase8e-0961.2
NC_014006:63000:650776507765454378Sphingobium japonicum UT26S chromosome 1, complete genomeacyl-CoA hydrolase1e-0860.5
NC_010334:2131939:213193921319392132430492Shewanella halifaxensis HAW-EB4, complete genomethioesterase superfamily protein2e-0860.1
NC_015593:2447844:245104624510462451423378Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completethioesterase superfamily protein5e-0858.5
NC_010410:513298:531272531272531694423Acinetobacter baumannii AYE, complete genomeputative acyl-CoA thioester hydrolase5e-0858.5
NC_017505:926801:932339932339932785447Neisseria meningitidis alpha710 chromosome, complete genomeputative acyl-CoA hydrolase4e-0858.5
NC_007484:882341:897532897532897951420Nitrosococcus oceani ATCC 19707, complete genomeThioesterase superfamily5e-0858.2
NC_015637:325561:344101344101344640540Vibrio anguillarum 775 chromosome chromosome II, complete sequenceAcyl-CoA hydrolase6e-0858.2
NC_010338:4530403:455160845516084552045438Caulobacter sp. K31, complete genomethioesterase superfamily protein8e-0857.8
NC_015434:2527412:255273225527322553244513Verrucosispora maris AB-18-032 chromosome, complete genomethioesterase superfamily protein1e-0757.4
NC_010611:3381500:338206633820663382488423Acinetobacter baumannii ACICU, complete genomeAcyl-CoA hydrolase1e-0757.4
NC_009952:592000:596472596472596903432Dinoroseobacter shibae DFL 12, complete genomethioesterase superfamily protein2e-0757
NC_007384:2007467:200746720074672007865399Shigella sonnei Ss046, complete genomehypothetical protein2e-0756.6
NC_007606:1209132:122095012209501221348399Shigella dysenteriae Sd197, complete genomehypothetical protein2e-0756.6
NC_010473:1384000:139926813992681399666399Escherichia coli str. K-12 substr. DH10B, complete genomepredicted hydrolase2e-0756.6
NC_009801:1392696:141504714150471415445399Escherichia coli E24377A, complete genomeacyl-CoA thioester hydrolase YciA2e-0756.6
NC_013364:1997891:200170520017052002103399Escherichia coli O111:H- str. 11128, complete genomeputative hydrolase2e-0756.6
NC_020063:2565605:259589125958912596289399Enterobacteriaceae bacterium strain FGI 57, complete genomeacyl-CoA hydrolase3e-0756.2
NC_010159:2440947:244156924415692442018450Yersinia pestis Angola, complete genomethioesterase family protein4e-0755.5
NC_008150:1705152:174353417435341743983450Yersinia pestis Antiqua, complete genomeputative acyl-CoA thioester hydrolase4e-0755.5
NC_010465:2282874:228546622854662285915450Yersinia pseudotuberculosis YPIII, complete genomethioesterase superfamily protein4e-0755.5
NC_004088:2227278:224780722478072248256450Yersinia pestis KIM, complete genomehypothetical protein4e-0755.5
NC_008149:1842500:188019518801951880644450Yersinia pestis Nepal516, complete genomeacyl-CoA thioester hydrolase4e-0755.5
NC_009381:1064227:106484910648491065298450Yersinia pestis Pestoides F chromosome, complete genomeacyl-CoA thioester hydrolase4e-0755.5
NC_009708:2245586:224817822481782248627450Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeacyl-CoA thioester hydrolase4e-0755.5
NC_014029:2138000:214148321414832141932450Yersinia pestis Z176003 chromosome, complete genomeputative acyl-CoA thioester hydrolase4e-0755.5
NC_017168:3290380:329038032903803290829450Yersinia pestis A1122 chromosome, complete genomeacyl-CoA esterase4e-0755.5
NC_017265:1765399:178670817867081787157450Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,esterase4e-0755.5
NC_014334:1848340:186942718694271869903477Lactobacillus casei str. Zhang chromosome, complete genomeacyl-CoA hydrolase4e-0755.5
NC_013199:1966334:198392119839211984415495Lactobacillus rhamnosus Lc 705, complete genomecytosolic long-chain acyl-CoA thioester hydrolase family protein6e-0755.1
NC_014315:2485527:248935824893582489780423Nitrosococcus watsoni C-113 chromosome, complete genomethioesterase superfamily protein7e-0754.7
NC_015275:3407358:343949834394983439899402Clostridium lentocellum DSM 5427 chromosome, complete genomethioesterase superfamily protein9e-0650.8