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Query: NC_003063:1128370:1148139 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1148139, End: 1149395, Length: 1257

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:922357:9253619253619266171257Agrobacterium tumefaciens str. C58 chromosome linear, completeMFS permease0666
NC_014103:3212839:3224267322426732254871221Bacillus megaterium DSM319 chromosome, complete genomemajor facilitator superfamily protein2e-33144
NC_008463:4743296:4767825476782547690721248Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable MFS transporter1e-24114
NC_016830:530397:5394855394855406991215Pseudomonas fluorescens F113 chromosome, complete genomeMajor facilitator family transporter1e-20100
NC_010322:6037566:6047157604715760483801224Pseudomonas putida GB-1 chromosome, complete genomemajor facilitator superfamily transporter2e-1894
NC_017138:1812000:181609418160941816642549Bacillus megaterium WSH-002 chromosome, complete genomeMajor facilitator family transporter6e-1892.4
NC_014323:4665610:4705044470504447063301287Herbaspirillum seropedicae SmR1 chromosome, complete genomemajor facilitator superfamily protein4e-1169.7
NC_015723:384000:3849963849963862641269Cupriavidus necator N-1 chromosome 2, complete sequencemajor facilitator superfamily protein9e-1065.1
NC_014306:2518996:2523564252356425249311368Erwinia billingiae Eb661, complete genomeMajor facilitator superfamily transporter4e-0859.7
NC_015566:4049000:4067480406748040687871308Serratia sp. AS12 chromosome, complete genomemajor facilitator superfamily protein3e-0757
NC_013859:421500:4215164215164226881173Azospirillum sp. B510 plasmid pAB510e, complete sequencehexuronate transporter2e-0757
NC_016625:1259778:1282760128276012839831224Burkholderia sp. YI23 chromosome 2, complete sequencemajor facilitator superfamily transporter4e-0756.6
NC_014639:3584000:3585997358599735872861290Bacillus atrophaeus 1942 chromosome, complete genomepermease9e-0755.1
CP002207:3584000:3585997358599735872861290Bacillus atrophaeus 1942, complete genomeputative permease9e-0755.1
NC_014119:977136:9896439896439909321290Burkholderia sp. CCGE1002 chromosome chromosome 3, completemajor facilitator superfamily MFS_11e-0654.7
NC_000964:4164683:4169069416906941703761308Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0653.9
NC_019896:17873:4127641276425861311Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetransport protein YybO2e-0653.9
NC_015177:2559903:2563029256302925643151287Pedobacter saltans DSM 12145 chromosome, complete genomemajor facilitator superfamily MFS_15e-0652.8
NC_013956:595320:6266976266976279831287Pantoea ananatis LMG 20103 chromosome, complete genomeExuT7e-0652