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Query: NC_003063:1128370:1140452 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1140452, End: 1140778, Length: 327

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012587:1203103:1213202121320212149081707Rhizobium sp. NGR234, complete genomemodification methylase EcaI4e-36149
NC_016812:152831:1621551621551638941740Sinorhizobium fredii HH103, complete genomemodification methylase EcaI4e-22103
NC_010424:697187:7415747415747432111638Candidatus Desulforudis audaxviator MP104C, complete genomeDNA methylase N-4/N-6 domain protein8e-2095.5
NC_015666:3606053:3624377362437736261161740Halopiger xanaduensis SH-6 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein2e-1891.3
NC_013929:3299736:3347147334714733489251779Streptomyces scabiei 87.22 chromosome, complete genomerestriction-modification system methyltransferase9e-1785.5
NC_010162:2469915:2481320248132024831551836Sorangium cellulosum 'So ce 56', complete genomehypothetical protein5e-1683.2
NC_011891:4169796:4184905418490541867041800Anaeromyxobacter dehalogenans 2CP-1, complete genomeDNA methylase N-4/N-6 domain protein1e-1582
NC_007760:4143301:4156064415606441578631800Anaeromyxobacter dehalogenans 2CP-C, complete genomeDNA methylase N-4/N-61e-1582
NC_016906:3006748:3013820301382030152681449Gordonia polyisoprenivorans VH2 chromosome, complete genomemethylase HpaI3e-1580.1
NC_016616:2997348:3006565300656530077311167Dechlorosoma suillum PS chromosome, complete genomeadenine specific DNA methylase Mod9e-1579
NC_014006:3124818:3130263313026331322031941Sphingobium japonicum UT26S chromosome 1, complete genomeadenine-specific DNA-methyltransferase6e-1476.3